Gene detail

Detailed information of SKAU_T00389180 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00389180	CHOLESTERYL ESTER TRANSFER PROTEIN	CM056395.1	7889298	7903567	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00389180

AATAACCCCTTCCTGGTGAGAATGCTGATGAGAACTGTTGGACAATCCGAAGCCGCAAAACTCCTtccacagacacacaacacacacaggcacgcacatacatgcacgcacatgcaggcatacacacagacacacacacacacacacacatgtgcacagacacatgcgtgcacacacatgcatgcacacacacacacacacacacacatacacacacacacacacacacacacacacacaaacgcaattCTCTGGTTAATGGCTTAGGATATATGTCTCTACAGACTCCCATCCCACCCCCTGACCCCCCACCAGAATGGGACGGCCCCTTGTCCTTTTGTTAACTCCTCTTCAGCTCCATACCCAGGTGGAGTTAGACAAAAAAGGCTCTACAGTGAAAGACTACCCACTCAATGTAAGAGCTCACGAGACATCCTGACTTTATTCAGCTGGCTCTGAGATCAGAAGGTACCATGATGGCGATGCTTGTGTTCCTGTCCGGCCTGCTAGGATGCCTCATTGGGACGACCCAATCGTGTCTGGATCGGGATTCTGCACACCCGTTCACCGGGATCGTCTGCAGAGTTACCTACCCCGCGGCACTTGTCTTGAATGAAAAAACGGCTCAGGTGATCCAAGCAGCATTCCAACACGCTCAATACCCTGACATTAAGGGCAAGAGATCCCTGCCTGTAATCGGGAAGGCACAGTACAACCTCAAGAATCTTCAGATCTACAATCTATCTATTGGGCGGAGCGAGGTGGAGCTGCAGGAGGACAATGGCGTCGGGATCTCCATCTCTAATGTGTCCGCCACCTTTCAGGGAACCATCACATATGAATATGGAAATTGGTTCCTGAAGGTGCGGCAATCTCTGGATTTTGAGATCGAGTCGCATATTGATCTGGTCGTCAACCCAAAGCTATattgtGGTAATGGAAAGGTCGCTGCAGACACCTCAGACTGCTACCTCACCTTCCACAAGCTCAAGCTCCTGCTAcagggagacagagaCCCAGGCTGGCTGAAGAGAGTTTTCACAGAGTTCCTCTCATTCACCCTCAAAATGGTTGTCAAAAGCCAGATCTGTAAAGAAATCAACAACCTGGCGAATATCATGGCTGACTTCATCCAAGAGACGGCAGAGCACTTCTTGAGTGATGGTGACATTGGCATGGACATCTCCATCACCTCCTCCCCCTTCATCACGTCCAAATACATTGAATCTTACCATAAGGGACTGGCCCGCTACAACAACCATACTGCAGTAATCAACGCCTCAGTGTTCAGCCCCGCCCAGCTGACAGACCATCGCATGCTCTACTTCTGGATTTCCGATGACGTGCTGAATCCCCTCTTGACTGCTGCACACCAAGATGGCCGCTTCGTCCGCAACATAACTGGAAAAGAGCTGGCGGGCCTTTTTGAGATGGACCTATCTACCACTATGCCCACTCTCTTGGACCAGCTGTTGTCCTCAGGAAACTCGGTGCTGGAGGCATGGAGTATGTCCATGCCCCACCTCTGGACGACCCCACAGGGCACGTTTGTCCGTTCTGTGGCCGCGGTGGAATTGACCAGTGGTTCCGATGACTCGGACGCCCCTGCTCTCTACTTTGAGATGGAAGTGGAGGTGGTAGTCAGAGCAGACTATGCTGAGAGGAAGCTAATCCTGAATGCCACGGCAACACAAGTCTCCATCTTGAAGGGTTCTTTCTCCCCAGGGAAACAGCAGCTGACAGAGGGTCAGGTGGAGTACCTGAAAGAGGTGGTCGAGAAAATTGGCATCCCAAAAGTAATATCCTACATAGAGCCTGGTCTGACCGCTGTGATGAACAAACAGGGCCTGGACCTGTTTGACATCATGAATCCTGAAGTTGTGTCCCACCAGgGGTATGTGATTGTTCAGCTGGACTTTGGATTCCCCCATCACCTGCTGGTAGACTTCCTACAAAAAACTCTGGAGTAACAACATGTTGGACACACtggacacacacgcatgcacacacatgcatagttATGTATATACACAAACAAGTCTACAATGTGAACAGTGTTGAAGTGCCAAAGGTGATACACTTTGTTTAAAACTGTTATGTGTACAAAATGTaactattttctatctcattgtAATGCCTTTAATTATGAATTTATTCAATGTATTATTGTTAATATTCATAGCAGTAGAACTGATGGTAGCATCAGAACCAgtaaatattttaactttttgTCTGGTGTAACTGCCTTGCTGTGAGTCAACAGAAACTTGAGTAGTCTAATGTGTTTATGGTATTGTGTAatttataataaaacaaagttccataacaaaacaaaaacgaaTTAATCAAAGGGCGTTTTAAAGTTACAAAATCCCCCAAAGCCCCCTTAAATGTAAAAATCCCCTTTTgttgatttctgcttttatatatcctgccactagatggcagtagccATTCCATGTATTTGTTCAATTCCACCACCAGCACGTCTGATTCAACTTAAAGAGGTTTTGATTAGCTAAACCAGGTGTGCTGATGATGGAATTTAACAAACACATGGAATTGCTGGATTGGCTCGGGGAGAGGTTTGGAAAGCACAAACACGATTAAGGCCTACTTGGAGCAGAAGTCTGCACATGGAACACTGATAGTATTAGATTAGACCGACCAcctcagagtcctgacctcaaatTAATTGAACTTAATTGAAGCTGGAATCACTTGGACAGGGAAAAGTTATGGCAAAGCCTGCAAAGAAGCTTGGAAGGACTACTTGAAACAATTACACGACAGTCTACCAATGTGAATTGCTTCTGTTTTGCATTCTATGGAAGGCCAAGCAAAATACTTGTTTTAAAATCACAAGAATTTTTTTGCTACTTTTCATTGTATTAACgtttatttgtg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01273	LBP_BPI_CETP	LBP / BPI / CETP family, N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001124	Domain	Lipid-binding serum glycoprotein, C-terminal	Interproscan
IPR017130	Family	Cholesteryl ester transfer	Interproscan
IPR017942	Domain	Lipid-binding serum glycoprotein, N-terminal	Interproscan
IPR017943	Homologous_superfamily	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47616	CHOLESTERYL ESTER TRANSFER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005548	Molecular Function	phospholipid transporter activity	Interproscan
GO:0006641	Biological Process	triglyceride metabolic process	Interproscan
GO:0008203	Biological Process	cholesterol metabolic process	Interproscan
GO:0008289	Molecular Function	lipid binding	Interproscan
GO:0015485	Molecular Function	cholesterol binding	Interproscan
GO:0017129	Molecular Function	triglyceride binding	Interproscan
GO:0031210	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0034197	Biological Process	triglyceride transport	Interproscan
GO:0034364	Cellular Component	high-density lipoprotein particle	Interproscan
GO:0034372	Biological Process	very-low-density lipoprotein particle remodeling	Interproscan
GO:0034374	Biological Process	low-density lipoprotein particle remodeling	Interproscan
GO:0034375	Biological Process	high-density lipoprotein particle remodeling	Interproscan
GO:0042632	Biological Process	cholesterol homeostasis	Interproscan
GO:0043691	Biological Process	reverse cholesterol transport	Interproscan
GO:0046470	Biological Process	phosphatidylcholine metabolic process	Interproscan
GO:0055091	Biological Process	phospholipid homeostasis	Interproscan
GO:0070328	Biological Process	triglyceride homeostasis	Interproscan
GO:0120020	Molecular Function	cholesterol transfer activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-