Detailed information of SKAU_T00380390 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00380390E3 UBIQUITIN-PROTEIN LIGASE RNF138CM056394.11329282213301147+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05605zf-Di19Drought induced 19 protein (Di19), zinc-bindingDomainInterproscan
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF18574zf_C2HC_14C2HC Zing finger domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR008598DomainDrought induced 19 protein type, zinc-binding domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR034734DomainZinc finger C2HC RNF-typeInterproscan
IPR052498FamilyE3 ubiquitin-protein ligase RNF138Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR46968E3 UBIQUITIN-PROTEIN LIGASE RNF138Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010792Biological ProcessDNA double-strand break processing involved in repair via single-strand annealingInterproscan
GO:0035861Cellular Componentsite of double-strand breakInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP