Gene detail

Detailed information of SKAU_T00369540 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00369540	HOOK PROTEINS	CM056393.1	14469304	14486061	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00369540

ATGGAGCGCGTGACTAACATGGATACCTATTTTTCGGAGATTCTCGATGAATTTATGACAAGTGCACTTGTCATTTGGGTGCATCTGTTTGACAATGTAGTTGATGGAGAAGGGGATGGGCCACTATCCACACAATACCTGGAGGTGAACTCCAGCTCCCAGAACTCACAGCACAAGTACCTGCGTCTCACCAATGGAATATTCCTCAATGAGGTCATGAGAGTAATcgatccaaatccaaaagtggAACAAATTTGCCGAAATGAGAACAACAACGAGGTCCTGAGGGTCCAAAACTTCTCCGTCTTGAACCGACACTTGAGGTCCTACTATCAGGAAGACCTCCAGCAGTTGCTTCTCATGCCCCTACCAAATGTGGCTGTTTTGGGACGTGACCCTCTCACAGAAGCATCCGTGGGAGAGCTCAGGaggctgctgttgctgctgcttgGCTGTGCTGTACAGTGTGAGAGGAAAGAGGAGTTCATACAGCAAATACAATCTCTTGACATCGAAACTCAAACTGCTATCGCCACCTGTATTCAGGAGgtcacACAGGACCCCAGCAATGTGCTGCCCCTCCAGTGGGGGGAGCTGAGTGCAGTGGAGGGGCCAGAGCTGCAGGGGCTTTTCAACACCATGGCGCAGCACATCCAGGCTATGCTCTTCCAGAGAGATTCACTCCTCGAGAGGATAGCGGAGCTGTATCAGGAGCACGAGTTGATGGAGAGAACCCCGTCCCCGAGTGCCTACCAGGACACGCCGCAGGGCCTGGCCGTGCAGCTGGCGGACAGCCGGGCCAAACTGCGGCGGTTGAGACAGGAGCTGGAGGAAAAGGGTGATCAGTTACTGGATTACAAGCAGGAAGTGCAAGCCATGGAGGTGGAGCTCAGAAAACTTCGTCAGGAGAACCGCACCCTGCATGGCGAGGCCCGCACTGCTCGGAATCTCCGCGACGAGCTGGACTATCTGCGTGAGCGCGCAGCCAAGGCCGACCGGCTGCAGTCCGAGCTGCAGAGCTGCGCTCACCGCCTGCGGAGCTTGGACCTGTACCGCACACAGCTGCAGGAGCAGCAGCAGTACTGCGCCACGCTCCAGGAGACGCGGGCCCTGCTGGAGGAGCAGCTGGGGGAGGTGCGGGCAAGGTGCTCCAGCCTGAGGGAGCTGGAGAGGGACAACCTGCTGCTCAGACAGAGGGTCGTCGACCTGGAGGGGGAGCGCGATACAGAGAGGCAGAGGGTTGATGAGCTTCTGGAGGAGAACATGAGCCTGGAGGCGGAGTTAAAGCACAGCCTGGGCGGGGCTCGGAACCTTCACCGCTCAGGGGCGGAGTCTGAAGACGAGTTGAGCTGTGAAACAGactttAAGCCCTTGAGTGTTGAAGTGAGTGAGGCATCGTCATGGAGACTGCTGGGAGCTGAGAATGAGAACGCGGAACTGCGCAGACGGCTGGAGCAGCTGCAGGCTGAACAGGAGGCCTGCGCAGATGGAGCGGGCAAGACACAGTTGGATCCGGCTGAAttacaggaggagagggagaagcTGAAAGAGGAGCTccggagacagacagacacacggacgaGCTTGGAGGCGGAGCACCGGAGCACACTGAAGGAGCTCCAGACCCTGAAGAATGAAAACTCCAGTCTGAGAAACTGTCTGGAACTGCTGAGAACGAAACAACAGCGCGAAGAGAGAAGAGAGGCTTCGTCGAAGGAGAAGAGGAGCGATGGGGAGGCCGGGGAGGCGGAgacccagagagaggagggagagggagggagggaggcaaagGGAAAAGCGGTTACAGGAGAAGAACGGAGGAAAacggagaaggagagaaagagagggatgagtCAAATTAGAactgagagagaagagggagagggagaggagatatTCAatctgaaggagagagaggacaAGTTAATGACGACGGGAAATGATGGAGAGATAAAGCCGATAGAGACTAAGAGGGACGACGGCGAAGGGGGGAAAGAGACACGCAGAGTAGAAATGTTGAAAGAGAAGGAAGAGGTAGACGGCAAAGGGAAAACCAGAGGAGGCGCTGAAGGCGAGAGGAGGCGAAGAATGGGGCGTgcggacagagggagagaaactgAGAGAGAGGCAGAAGACCGAGGGGGAGGAAGTAAAGGAGACGGAGGCCCTCCAGGAGGCGGAGAGGCAGGCGCAGGAGAGCGACAGGCAGGCCGGCCTGCTCCAGGAGGCGCGCTCCAAGCTGGGGGAGGAGAGCAGGAGAGCCGTGAGGGGCCGAGCAGCAGCTGTGTGGCCTGGAGGCAGAGAACCTGGGGTTTGAGGAGGTCTGCGGAGAGCCTGGGAGCAGCCAGGAAACAGATAGAGCTCCTGCAGGCGGAGTCTGCCCAGATGGAGGAGGATCTCGCCCGGCTGCGCAGCCAGGCGGAGCTGCAGAGGTTGGAGGGGGCCGTGATTGCGCAGCTGCAGGGCGAGAGGGCGCAGCTGGAGAGGGAGAAGGACGCCCTGCGCAGCACCATCGACGCGCTGCGGGCCACTGCGCGCAAGGGTGACCAGCTGGAGCTGGCCAGCCAGACGCTCAAAGCGGAGGCGGAGCGCCTGGGGCGGAGCCTGGAGTCGTCCCGGCGACGGGGAAGACGAGCTGGGGGCGGAGCTACGGGAGGCGGGCCTGGAGGCGGAGGCCCTGGGACGGGGGGCGGGGACCAGGCGGTGCTGGAGGCCGCGCGCCTGGAGCAGGAGAAGGAGGCGTTTGAGAACCAGCTGGACGCCCAGCGGAGGGAGAACAGGCAGAGGGAGCGGGAGGTGGCCAGGCTCAGGCAGCAGCTGGAGAGCACCGCCTCGGCGCTGGAGCACAGCAACCAGAGGGCCTGCAGCCCTGGAGGCAGAGAACAGGTCCCGCTCCCCTAG

Transcript

SKAU_T00369540

CACAATCTAAACAGATTTACAGCTATATTATGTAAAAAGAGAACTGCACATGGAGCGCGTGACTAACATGGATACCTATTTTTCGGAGATTCTCGATGAATTTATGACAAGTGCACTTGTCATTTGGGTGCATCTGTTTGACAATGTAGTTGATGGAGAAGGGGATGGGCCACTATCCACACAATACCTGGAGGTGAACTCCAGCTCCCAGAACTCACAGCACAAGTACCTGCGTCTCACCAATGGAATATTCCTCAATGAGGTCATGAGAGTAATcgatccaaatccaaaagtggAACAAATTTGCCGAAATGAGAACAACAACGAGGTCCTGAGGGTCCAAAACTTCTCCGTCTTGAACCGACACTTGAGGTCCTACTATCAGGAAGACCTCCAGCAGTTGCTTCTCATGCCCCTACCAAATGTGGCTGTTTTGGGACGTGACCCTCTCACAGAAGCATCCGTGGGAGAGCTCAGGaggctgctgttgctgctgcttgGCTGTGCTGTACAGTGTGAGAGGAAAGAGGAGTTCATACAGCAAATACAATCTCTTGACATCGAAACTCAAACTGCTATCGCCACCTGTATTCAGGAGgtcacACAGGACCCCAGCAATGTGCTGCCCCTCCAGTGGGGGGAGCTGAGTGCAGTGGAGGGGCCAGAGCTGCAGGGGCTTTTCAACACCATGGCGCAGCACATCCAGGCTATGCTCTTCCAGAGAGATTCACTCCTCGAGAGGATAGCGGAGCTGTATCAGGAGCACGAGTTGATGGAGAGAACCCCGTCCCCGAGTGCCTACCAGGACACGCCGCAGGGCCTGGCCGTGCAGCTGGCGGACAGCCGGGCCAAACTGCGGCGGTTGAGACAGGAGCTGGAGGAAAAGGGTGATCAGTTACTGGATTACAAGCAGGAAGTGCAAGCCATGGAGGTGGAGCTCAGAAAACTTCGTCAGGAGAACCGCACCCTGCATGGCGAGGCCCGCACTGCTCGGAATCTCCGCGACGAGCTGGACTATCTGCGTGAGCGCGCAGCCAAGGCCGACCGGCTGCAGTCCGAGCTGCAGAGCTGCGCTCACCGCCTGCGGAGCTTGGACCTGTACCGCACACAGCTGCAGGAGCAGCAGCAGTACTGCGCCACGCTCCAGGAGACGCGGGCCCTGCTGGAGGAGCAGCTGGGGGAGGTGCGGGCAAGGTGCTCCAGCCTGAGGGAGCTGGAGAGGGACAACCTGCTGCTCAGACAGAGGGTCGTCGACCTGGAGGGGGAGCGCGATACAGAGAGGCAGAGGGTTGATGAGCTTCTGGAGGAGAACATGAGCCTGGAGGCGGAGTTAAAGCACAGCCTGGGCGGGGCTCGGAACCTTCACCGCTCAGGGGCGGAGTCTGAAGACGAGTTGAGCTGTGAAACAGactttAAGCCCTTGAGTGTTGAAGTGAGTGAGGCATCGTCATGGAGACTGCTGGGAGCTGAGAATGAGAACGCGGAACTGCGCAGACGGCTGGAGCAGCTGCAGGCTGAACAGGAGGCCTGCGCAGATGGAGCGGGCAAGACACAGTTGGATCCGGCTGAAttacaggaggagagggagaagcTGAAAGAGGAGCTccggagacagacagacacacggacgaGCTTGGAGGCGGAGCACCGGAGCACACTGAAGGAGCTCCAGACCCTGAAGAATGAAAACTCCAGTCTGAGAAACTGTCTGGAACTGCTGAGAACGAAACAACAGCGCGAAGAGAGAAGAGAGGCTTCGTCGAAGGAGAAGAGGAGCGATGGGGAGGCCGGGGAGGCGGAgacccagagagaggagggagagggagggagggaggcaaagGGAAAAGCGGTTACAGGAGAAGAACGGAGGAAAacggagaaggagagaaagagagggatgagtCAAATTAGAactgagagagaagagggagagggagaggagatatTCAatctgaaggagagagaggacaAGTTAATGACGACGGGAAATGATGGAGAGATAAAGCCGATAGAGACTAAGAGGGACGACGGCGAAGGGGGGAAAGAGACACGCAGAGTAGAAATGTTGAAAGAGAAGGAAGAGGTAGACGGCAAAGGGAAAACCAGAGGAGGCGCTGAAGGCGAGAGGAGGCGAAGAATGGGGCGTgcggacagagggagagaaactgAGAGAGAGGCAGAAGACCGAGGGGGAGGAAGTAAAGGAGACGGAGGCCCTCCAGGAGGCGGAGAGGCAGGCGCAGGAGAGCGACAGGCAGGCCGGCCTGCTCCAGGAGGCGCGCTCCAAGCTGGGGGAGGAGAGCAGGAGAGCCGTGAGGGGCCGAGCAGCAGCTGTGTGGCCTGGAGGCAGAGAACCTGGGGTTTGAGGAGGTCTGCGGAGAGCCTGGGAGCAGCCAGGAAACAGATAGAGCTCCTGCAGGCGGAGTCTGCCCAGATGGAGGAGGATCTCGCCCGGCTGCGCAGCCAGGCGGAGCTGCAGAGGTTGGAGGGGGCCGTGATTGCGCAGCTGCAGGGCGAGAGGGCGCAGCTGGAGAGGGAGAAGGACGCCCTGCGCAGCACCATCGACGCGCTGCGGGCCACTGCGCGCAAGGGTGACCAGCTGGAGCTGGCCAGCCAGACGCTCAAAGCGGAGGCGGAGCGCCTGGGGCGGAGCCTGGAGTCGTCCCGGCGACGGGGAAGACGAGCTGGGGGCGGAGCTACGGGAGGCGGGCCTGGAGGCGGAGGCCCTGGGACGGGGGGCGGGGACCAGGCGGTGCTGGAGGCCGCGCGCCTGGAGCAGGAGAAGGAGGCGTTTGAGAACCAGCTGGACGCCCAGCGGAGGGAGAACAGGCAGAGGGAGCGGGAGGTGGCCAGGCTCAGGCAGCAGCTGGAGAGCACCGCCTCGGCGCTGGAGCACAGCAACCAGAGGGCCTGCAGCCCTGGAGGCAGAGAACAGGTCCCGCTCCCCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19047	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR043936	Domain	HOOK, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947	HOOK PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030705	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-