Gene detail

Detailed information of SKAU_T00366810 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00366810	PLATELET-DERIVED GROWTH FACTOR	CM056393.1	7501717	7516096	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00366810

AACAGCAGTGAAGCGTTCGGAACCTGAAGGACTGTTGATAAGCTTACAAAGAAATTCGGTTTTCAGCTCCACCACGCGCTGCCATGCACTGCGCTTCGCTACATTACTTGCAACGGATCATATACGATTGTAGGAGAAGACAGAAGTGAATTACTTTTAAAAAGAGTACAGGTTGTAAATTTCGAATTTATTTTCGAGCAATAAAAGCGACTGTTCAAGTTGTGAATTTATTTGGTCAGCAACAAATGGCTTGTGACTTGGACATGGGATTTTGTTTCTAAATGTCCTGTTGACATATATCACCCATCGACTGAGATATTGATGCGAAatacagttgttgttttttttaaacatcatttttttttaaataataaagaagCCGTCTTCTAAACCGTCTCTGTGAAGTAATATCGCACAATACCGCTATAACTTTTACTGCCTCGTAAAGTGGTAGCTGCTGTGAAAGCACTTCATATTCATTGAACGAGCTTATTTTATTATCAGCTGATTTTCACCCGGGATTGTCTGATGTGGGAAGTAAAGCAGGCATTCAGTTGATGTAAGGCTTGGGAAACGTATATAGCAAACACAATCTTTTTAAGTAATTAGCCGTTTACAACTTTAATTGCTGCACATTTTGTTTCTGGGATTTTTTCCGACACATTTACGACGGAATTTAGTTTTGTCTTTTTATTCAATTTCATAATATATGGACTTGTTTTTCAATGGACTTCAAATACGTTTTTAAGACCTTAGCTCTTTGGAATTCACACAAGCAAGCATACGCTCTTGCGGTGGAATTCAGAGCCAATTGTGCTCCGAATGGGCAGTTGCTAAGTAGCACAGTTACATCGGATGCGTTGGATATTTTCTGGAGTCCATCGTGTGCGCTGATCTGCGCGTGAGGGATCCACGGAGCGAGCCGCTGTCCCCGCGCCAAGTGCTGAGGAAGAGACTGCCTCGCGTCTCCATAAATGCACAGTCAATCGCGGAGTCTCGACTCCGGGTAGCAAGATGAGCTCGTGGATTCTGCAGCTTACGTTGCTTGCGGCGTGTCTGCGGTTTGGTTGCGCCGAGGGGGACCCTCTGCCTGCAGCTCTGGTAGAGATGGTGAGAAACAGCCCCATCACCTCCATCCAAGACCTACAGCTGCTACTGCTGAGTGACTCCGTAGAAGAGGATCCAGACAGTCTTCCAGCCAGGGGGCTTCATTCCAATAACACCTTCAATCGCTTGCCCAGGAGTAAGGCCCAACCAGCACAGCAGGCCCTGTGCAAGGTCCGGAACGGAGGTTCTGGAGGTGACCCGTGCCATGCTGGACCGCCGCAATGCCAACTTCATGCTGTGGCCCCCCTGTGTGGAGGTGCAGCGCTGCTCTGGCTGCTGCAATGCCAGGACCCCTGCAGTGGTGTTCCTGTCATCACTCAAACCCGCTACCTAcagGTAATGAAGATTCAGTACATGAGCAGGCGGCCGCACTATGACAAGGCCGTCATATCCGTGCAGGACCACGTGGAGTGCCGCTGCCAGAGCGTCCCCAAGCCCGCCAGGACCACCCAGAGAAAGATGCACCCCCGCAGACAGACCCTCAAGGACCCCGTGAGCAGGGCCCGGTCCAAAGAGGAGCTCCACCGACGGGACGAGCTCAAGCGGAACCAGAACTTCCATCCGGACGAGCGGCAGCCCAGGTACTCCCAGGAGCACACACTCGCCCCGCGGGGGGGGCAACGCGCTCCCGGGCCACGCCCGCACGCTGGAGTCGCAGACGGGGCAGACCCCCCTGCAGGTCCCCCTGGGGGCGCTCAACCTGACGGGGCAGCGGGAGGAGCAGGAGAGAGCCCTGCTGATGGGCTTGGGCCTGCAGAGGCACCCCCAGGACATGGGGGAGAACGGCCTCAACGTGACCGAGGAGACGTCGGCGGACGGGAGGCGCCCGCCCTGGCTCAACTTCACGGAGAACGGCACGCAGGGGAGGCGCCGCGGGCCGCACCACGACCCCGCCGACCGGCGCGCGACCGGGGACGGGCGGCCGAGGGACCGCAGCGTCGCCGTCGATACCTGGGACCCGGAGGCGCAAACGCGCGCGACGCAGCGGAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04692	PDGF_N	Platelet-derived growth factor, N terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006782	Domain	Platelet-derived growth factor, N-terminal	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11633	PLATELET-DERIVED GROWTH FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005161	Molecular Function	platelet-derived growth factor receptor binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0014068	Biological Process	obsolete positive regulation of phosphatidylinositol 3-kinase signaling	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0031954	Biological Process	positive regulation of protein autophosphorylation	Interproscan
GO:0043406	Biological Process	positive regulation of MAP kinase activity	Interproscan
GO:0048008	Biological Process	platelet-derived growth factor receptor signaling pathway	Interproscan
GO:0070374	Biological Process	positive regulation of ERK1 and ERK2 cascade	Interproscan
GO:0070851	Molecular Function	growth factor receptor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-