Detailed information of SKAU_T00365330 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00365330HLA CLASS II GAMMA CHAINCM056393.132771833284141-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00086Thyroglobulin_1Thyroglobulin type-1 repeatDomainInterproscan
PF08831MHCassoc_trimerClass II MHC-associated invariant chain trimerisation domainDomainInterproscan
PF09307MHC2-interactCLIP, MHC2 interactingDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000716DomainThyroglobulin type-1Interproscan
IPR011988DomainMHC class II-associated invariant chain, trimerisationInterproscan
IPR015386DomainMHC class II-associated invariant chain/CLIP, MHC II-interactingInterproscan
IPR022339FamilyMHC class II-associated invariant chainInterproscan
IPR036613Homologous_superfamilyMHC class II-associated invariant chain, trimerisation domain superfamilyInterproscan
IPR036857Homologous_superfamilyThyroglobulin type-1 superfamilyInterproscan
IPR043530FamilyHLA class II histocompatibility antigen, gamma subunitInterproscan
IPR052001FamilyMHC Class II Gamma Chain/ThyroglobulinInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR14093HLA CLASS II GAMMA CHAINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0001961Biological Processpositive regulation of cytokine-mediated signaling pathwayInterproscan
GO:0002286Biological ProcessT cell activation involved in immune responseInterproscan
GO:0002830Biological Processpositive regulation of type 2 immune responseInterproscan
GO:0004896Molecular Functioncytokine receptor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0006955Biological Processimmune responseInterproscan
GO:0009986Cellular Componentcell surfaceInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0019882Biological Processantigen processing and presentationInterproscan
GO:0033674Biological Processpositive regulation of kinase activityInterproscan
GO:0035718Molecular Functionmacrophage migration inhibitory factor bindingInterproscan
GO:0042289Molecular FunctionMHC class II protein bindingInterproscan
GO:0043518Biological Processnegative regulation of DNA damage response, signal transduction by p53 class mediatorInterproscan
GO:0050731Biological Processpositive regulation of peptidyl-tyrosine phosphorylationInterproscan
GO:0060907Biological Processpositive regulation of macrophage cytokine productionInterproscan
GO:0070206Biological Processprotein trimerizationInterproscan
GO:0070374Biological Processpositive regulation of ERK1 and ERK2 cascadeInterproscan
GO:1902166Biological Processnegative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediatorInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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