Gene detail

Detailed information of SKAU_T00363910 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00363910	3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE	CM056392.1	34389920	34406683	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00363910

ATGCATCACACCTCGTGTGTACGCTCTGTCAAGATGCCTGGATCAGTTCCTGCCAGCGGTGAGGCCACGTGGCCCAAAGATGTGGGGATCATTGCCCTGGAGGTGTACATCCCTGCACAGTTCGTGGACCAGGCGGAGCTGGAGCAGTTTGACGGCGTGGCAGCGGGGAAGTACACCATCGGCCTGGGCCAGGCCCGCATGGGTTTCTGTTCCGACCGCGAGGACATCAACTCCCTGTGCCTGACCGCGGTGCAGAGGCTGATGGAGAGGAACTCTCTCTCCTACGACTCGGTCGGCCGGCTGGAGGTGGGCACCGAGACCATCATAGACAAGTCCAAGTCGGTGAAGACGGTGCTGATGCAGCTGTTCGAGGAGTCCGGGAACACGGACGTGGAGGGCATCGACACCACAAACGCCTGCTACGGGGGCACTGCTGCGCTCTTCAACGCCGTCAACTGGGTGGAGTCCAGCTCCTGGGATGGTCGCTATGCGCTGGTGGTGGCGGGGGACATTGCCGTGTACGCTACAGGAAGTGCAAGGCCCACTGGGGGTGCAGGAGCAGTGGCCATGTTGGTTGGGCCCAACGCGCCTTTGGCTTTTGACAGAGGTCTACGGGGGACACACATGCAGCACGCCTATGACTTCTACAAGCCTGACATGGTGTCAGAGTACCCTGTGGTAGATGGCAAGCTGTCGATACAGTGCTACCTCAGCGCGCTAGACAGGTGCTACTCTGTGTACCGCAACAAAATCCACGCACAGTGGCAGAAAGAGGGCCTTGAAAAGCGCTTCAATCTGGAAGACTTTGGTTTCATGGTGTTCCACTCTCCCTACTGCAAGCTGGTCCAGAAGTCACTGGCCCGCCTGGTACTCAACGACTTCCTCAGTGATCCGAACCCCAATACAGAAAGTGGCCGTTTCAGTGGCCTGGAGGCTTTCAGGGAAGTGAAGCCTGAGGAGACTTATTTCGACCGGGACGTGGAGAAGGCCTTCATGAAGGCGAGCGCAGAGCTGTATATGCAGAAGACCAAGGCCTCCCTCCTGCTGTCCAACCAGAACGGAAACATGTACACGCCGTCAGTCTACGGCTGCCTGGCCTCCGTCATCGCCGTGCATACGCCCCAGGAGCTGGCAGGGCAGAGGATCGGCCTGTTCTCCTACGGCTCAGGATTTGCTGCCACGCTCTACTCCATCAGAGTCACACAGGATGCTACACCAGGCTCAGCGCTGGATACCCTGGTGGCCAGTCTCTCAGACCTGCTGGCCCGGTTGGACTCCCGGAGAAAGGTTTCGCCAGAAGTGTTTGCTGAGAACATGAAGTTGAGGGAGGAGACCCACCACCTGGCGAACTACATCCCTCAGGGCAGCGTGGACGACCTGTTTCCAGGCACATGGTACCTGACGCACGTAGACGAGAAACACCGCAGGCAGTACGCTAGACGGGCTCCCTGGATTGGTCAGTTTGACCATGGTGACAGAGCGCATCCCCAGTCTGGCAAAGACGACGCGGTCACCATCGCCAACGGGGAGCACTGACATAGCCACTGTGAGCCGTAGGCATACGTACAGAGAGGAAACAAAACCGCGGAATGCAAACGGGATCCCATCTTCCTTCTCAGTGGCACAGCACTGCACACAAACCTCTACAGACTTAGCAGTTAGGGGCAGGCAACGTGACTGCTCACACACGGCCGGCCACATTCCCCAAGCTTCAATCGTGTTCATTATTACGACAGGGCATATGCCTTTGCCAGGGACTTCCAAAGACGGGACTtgtattgtgtgcgtgtgtgtggcgaCAGGTTAAAACATTGTGAATGTTTTAACCTCGAAGTTCGGTACCCCCATCTCCGAGTATGATGTACAGAATATGTTggataattatttttctttttttatgatcCTTTTTGTCAGTTTATCGGCACTTGTGCACAAAGTGCACTCACGCATTACTTCAGGAGGAAGGGAGCCCTCCAGAAGTAAAAGCTTTGGGCATGAAAAGGGAACTGGCCCTCTTAACCTACTCTGTTCATTTCCATTATTGCTGCTGCATTCCTGTTTCTGTGCTGTAGGGCGTTGGCGATTAGTCAGGCCGTTGACTTGTACTACATTTACCAGTAGATGGCGCACTCAACACGAACGATTGATAGTTTCGGTGTCAATCCAGATACCCAGGTCTACAAGCATGGCTTGCAGCAAGCAGAGAAGAATGGTACATAAGACTGAACCATTCCTATTACCATTGTTATCAAAGAAAGATTACGTCAGTcaatcaaatataattttttttttgggggggttggggtgttAAAGTTTATGGTTGTCTTAAAATTTCAACGATGATACACAATTTGTTCAGAATCTTTGTAGTTTCAATAGACTGCCTGGCGGAGTGAAGTGGCAAcaaaaaaagctaaaataaatgGTTTCTTTGAAAGGGAATTACACTTAGTTGTTGCCATTTAGACTTCTAAGGAAGTTTAAATGTACTTTTACAAAAATTCTTATGTAGCTATAGTATAGACTGAATTGAAATACATAGGTTAAAAAATTAATAAGTTAATGGTAAATGTATGTTTCCATTTTGATATATGTTCGGAGGGGGAGGTAAACTAACCCACAAAACCACCACGATGCACGCCTATGCAAATTCTCATGCTTCAGGGATTTGGCAATCTTAAGAGTAGTTTGAGAGAAGAGGGCTGAAGTAAAGGGGTTTAACTATACCATAGTGTCCTCTGCTCCTTTAGATGTGCCAAATTGCTGAAGAGGGTGGAGGGTGTAGCAAACTGGTAGAGAACTGCATATGTTCTGGAGGTTGAGAATTGGGCAGTCTGGCCCTCATTGGTTACCCCAggattgaaaaaaagaaaaaaaagtcttgtGGCTGTTGCCTTTTTTATATCCATTTTGAATACTGTGAAATTATGTATTTGTGTGGAAACGGGGCAACAAGTGTATTTGACTTAGGGCCTTAAACTCTAAAGGGCTTACGAATTTCTCTGCTATAAATGGGTGTATTTTCAGTAAGGACGTATGTGACAAATGGGCTTCACTTGTATACATAGAAATAAACTGGAATTATGCTACATTGTTTGTGTATGCTCAATAGCAACTGAAATCCTTTAAAAAACGGGGAGCATCGTCCTGGAGCACAGTATTGCCCCCAGGTTTTCTTGCGCTTTTAAACCACTGGTAACTACTTCAAGCGGTGTTTTTTTTGGCGGCCCTGAGACGGTATTATCTTGTGCTAGACGGTACATGCTCGGGCGGAAAAAGCTGCAGACGCTACTGTCCTCCAGGAATGTCTTTTGTTTGCCCGTGAGAGTTTAGCATTTCCTCTGTGATGTTAGCCAAGCCACTGGCAGAGTGGGGCTCTGGAACTGTAGACCAGACAGGCAGCCACTATTGGTCATCTATATAGACTGCTCAAGTTACGAGAAGCCTTACTTTACACACgtactaaatgtaaaaaaaagaaaaaaacaaaaactgcatACTCTTAATAATGTACAGATTTATGTTCTTTTGTTCTTTAAATTTTTCAGCCAAGACCATTTTACCTCTGACGTTATATATTGAATAGGCTGGTGTTTACAAATAGTTTATCTTTGAGATCAATTTAATTATACCAATTTTTGGTGATATAATGTACAGTACTAACTagaaatattatttatatatgtagTGTAAATTTGTGTctgatcaagtttttttcttttctagaaAATTCCATATAGAAAAAAATCTGTATAGTAAATGAGCAGTCGAAGAGATGAACTGAGAAACTAATAAATGTCTTCATTTGAAATGGCTTTCGTTTTGCATTtgtcaattaaattattttactg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01154	HMG_CoA_synt_N	Hydroxymethylglutaryl-coenzyme A synthase N terminal	Domain	Interproscan
PF08540	HMG_CoA_synt_C	Hydroxymethylglutaryl-coenzyme A synthase C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000590	Active_site	Hydroxymethylglutaryl-coenzyme A synthase, active site	Interproscan
IPR010122	Family	Hydroxymethylglutaryl-CoA synthase, eukaryotic	Interproscan
IPR013528	Domain	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	Interproscan
IPR013746	Domain	Hydroxymethylglutaryl-coenzyme A synthase, C-terminal domain	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43323	3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004421	Molecular Function	hydroxymethylglutaryl-CoA synthase activity	Interproscan
GO:0006084	Biological Process	acetyl-CoA metabolic process	Interproscan
GO:0008299	Biological Process	isoprenoid biosynthetic process	Interproscan
GO:0010142	Biological Process	farnesyl diphosphate biosynthetic process, mevalonate pathway	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-