Gene detail

Detailed information of SKAU_T00357050 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00357050	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 LRRC19 FAMILY MEMBER	CM056392.1	9131405	9139385	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00357050

TAGAGATTAAAGCGTAAACAACAATGGTAATAAAGTGCTTAGCACCCAGCAGATAACAATATAAGCACACACAACCCGAAGATTAACACGTCAGAAACCGGTCAACAGATTACCCGTCCCTGATAAGGATTTTTTCCTGCAACAAAATTCATATTCAGAGTATTGCCTGCATTCAATCAACCTTtactttgttttacattttaaaataatcttttCACTATTTCTTCACAAACTCTGCTGAGTTAATTTTTGCGATCAATGTACTCATAAAACTGTGATTgtgaggaaaacagaaaaattctTGCTATTAGTTGTTAGTCAAAATTAAAGTCAAATGTTGTCAATTAAAGCCTATGTATGTAaggtatgtaaaagataatttgcaGCATATCCTATAGACTTATAGAATCACCATGCTCAGGCAGTTTTCGCAATAACCTCATTTCTGACAGGCCTTCAGAGTTGAGTTCAACTATAGCGTGTCAGATTGCCCCAGTTAACACACTGAAACACTGTAGTCAATCTTTAGCTAAATGAAATAGCTGAATTTTATTACTGAAGCCAAAGGTCTGTTACACTTTCATTCAGTTCCAGACAGAACTTGTTCCGGGAGCTATTTCAGAGCAAGTACTTCCCAAGGTGTTGGTTTGTGTTGCACCACACATTTGATCCGGAGGAAAGACCATGAGTGTCAGTGGAAGACTGCTTCTTGGACTGAGCTGTGTGTTAATGGCATCAAGACCAGCGGCTAGTGAAAATGGGCTGGATACTAACTTTTACAACAAGACACTGAAACTCATTCCGCCCCATCTTCCCTCAAACATCACAAAGCTAACCCTGAGCCACAACCTCATAGAGATGTCAGAGGAGGACATCAGGACGCTTAAAAATTATACCAAGCTCACGGAGTTCTATCTtgacaacaacaaaataaatgttttgccCGGCCACGTCTTTGACAGCCTCTCAAATCTGAGGATCCTCAGCTTATCCAACAACAGCATCAGCAGAATAGAGCCAAAAGCCTTCAAGGCCCTGGGCCAGTTGAAGAAGCTGGACCTTTCCCACAATCCACTGCAGTCCCTCCCGCCTGGGGTGTTCGCCAGTCTCACTAGCTTAGAGAGTCTTTCCCTGCAAGACAGTGGCCTGCAGTCTCTAGAGAACAAGACCTTCACGTATCTGATTCAACTGACACACATCGACCTGGGGGGAAATCCTTGGAACTGCACTTGCGACTTTTTGCACCTAATAAGAAACTCGGGAGTGGAGAACAGCCCGGGGGCTGTTTGCGCGGGCCCGAAGGAAAGAGAAGGTAAAAGCCTTATGGACAGAAGCTTTTGTTTTCCCAAGTTGACCACAACAAAACCGCCCTCGACCATCAAAGTGAGCTCAACCCAGGCAGTAAAAACCCTCACTCCTGGACGCAAGAACAGTGCCAAATCCATGGATAGAGCTGCCCCTGTCCCGGGTGGAGATGCCCCTGTCCCGGGTGGAGATGCCCCTCCAGAAGGGAACACCTGGAAGTTCCTGGTGGGAGTGCTGGTGACAGCCCTCAGCACCTCCACGCTCCTCGTGTGCGCTGTCAAGGCGCCCTCCTGGTACAAGCTGTTTTTCAACTACCGGCACCAGCGTCTACGCGAGGAGGAGCCCAACGTGTTCACCACTGGACGCTTCTCCAACTTCAGCCTGGACACAGAGCAGACGGAGACCAGCATCCAGGAGGTGGAGCTGGACATGGAGCTGGAGTTTggggacgaggacgaggacgaggacggcTACATCGAGGACCGCTACATTGAAGCAGGGGACTACAAAGTGGTGGACGAGGCCTGAAAAGTTGTGCCCAGGTCACCAACTGTGGACTGCAGGTGAACTGGGCTGGAGCGTGGCTTCTGGTTACGACCAGAGGATTACATCAGTAGAGCTGAATCCAGGGGATTCTCATGACCTACACTTATGATTTATTTTGAAATGCATCAAAAAATATACACAACTAATGAGactgtgaaaaacaaaaaaacaacaatgacTAGCTGCACTGTTCTCAATGTTTTGCACAACGGTTTTCCCCCAAATAAGTTAAATTAAGTACACCGAGGACCTCCTCTTGCATCCTGACTGTTTGgggtttaaacaaaaaaaatgtgtttctttgAAAATGATTTCCAGTAAGCAGACCAGGAATGATGACTTTCAAAATCTGCACAATCTGTTATGTATATCTTGTAAATCTACTAAATCTTCTGTAAATCTGAATGTACCTATGTTTTGATAACAGAGTAATAAAACTCCTAGACTGCTTTAAGACAGGGGCTGATGGGATAGAAGAAGTCATACAGAGATGCAACCTCCCTTTTATGGTCAAGCATTATTTCGTTCAATCATGAAAGGTTACACACCACGGTTATTACATTTTAAGTAAACAAAACCGTACCTTGATCTCATAATGTGCATTTCTGACTAATGTTTGATTTGTTATAAGTCATTAGGCCAATGTAAAAGCCTCTAGAATTCTGAATGTGCAAACCACCGATTGGTCTATTGACAGCAAAGCAGAGCTTGAATTTCTGCAGTTCAAATTTCTCCAGCCTATGTACCATAAACATCTCTCACTTAGCTACAGGTCAAAATGAGGACAATTAGTATGAAGCAAAGAAAAACTAAATCAAAAGAATAACATGTCTTACATGCCATATTTAGTTTCTAAAATGTAATGGTTACACAAACTTAGAGAGCCTTATAAGGCTACCTTAATGCACAGTTAGCAAGATAGATGCCTAACTTTAATCAGCAGACTAGGGGAATTTCAACTTAACATTAGCACTTAGAATCTAAATTAAATGTTAACAAGCTTGCCAAAcacttacatttttaaataacattACCCAGATAATTTCTCTAGCTTACAATACAGTGCAACCTGCTTGCAAGCATATCAGATGAAGGAAGAATAAATGATGGAATGATAAAAAGCCATAGGACAAAATTGCTTGTATTCAAATGTTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF15176	LRR19-TM	Leucine-rich repeat family 19 TM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31450	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 LRRC19 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0032637	Biological Process	interleukin-8 production	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:1901224	Biological Process	positive regulation of non-canonical NF-kappaB signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-