Gene detail

Detailed information of SKAU_T00355570 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00355570	FIBROBLAST GROWTH FACTOR	CM056392.1	4660921	4692994	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00355570

TCCGCCATGGTCGGGCGGCACGTGCGCAGCTACAACCACCTGGAGGGAGACGTGCGCAGGAGAAAGCTCTTCTCCTTCCAGAAGCTGTTTCTCAGGATTGATAAAAACGGGAAAGTCAACGGCACCAAGAGCAAGGACGATCCGTTCAGTTTACTGGAGATTAAGTCAGTACGTGTGGGGGTTGTGGCCATTAAGGGGCTTAGCAGCAGCTATTACCTGGCTATCAACAAGAAGGGGGACTTATACGGATCGAAGGACTACGGGATTGACTGCAAGCTTAAAGAACGCATCGAGGAGAACGGCTACAACACATACGCCTCGGCCGAGTGGAGGAACAAGAAAAGACCGATGTTCGTGGGCCTGAGCGCCAACGGAAAAcccatgagggggaaaaaaactcggCGGAAAAACACCGCCACACACTTCCTCCCTATCGCGGTGTAGCGCGAGCGTCGCGAGGAAACGTAATCCCGACCTGCGCTGTCGCCGAGGCGTCCCGAGGGACCTCCCTACCTTCTACTGCACTGAAAGAAATGACTTTGAATCTTAAAGAAATGCAAATATTTTCtccagacatttttattttattgcaaaaGAGGAAGGCACTATTTAAAGGAACCGTTTGAACTGAAACCGGTTGAGTCTGATTGAAGTCGTTTCGTTTGTTATTAAGTTATGAATGGGCACAGAGGGAAACGCAAGGACTCTTTCTGTGCCAAATCATTTGGAAGTAATCAAATGTTGGACTAAATGAGGAATGAAAAACGAGGATGAGGATAATTCCAACATGTTTCAAGCATTACTGCACGGACTGACAAAGGGAACcgtttgtgtgcatatgtgagtgtcATCTTTGAAAGCAGGTATTTTTATGCTATACTCATATGAAGACTTTTTTTAGTGAGATTCAAGATTAGTAAACCAGTGAACAGATAAGGCGTTACCGGAAGCACTTGGATGAGGTGTAAGAATTAGGCACTGGGGGGAGGACTTAGTTGAGTATTTAGTCAAATTAGCACCAGTGGTTAGTTAGCACCAACATAACAACTAACAACATTAATAACACGAAAAGCCACTGTCTTTGGATTTGTCAATTTCTTTTTCTGACTGCTTttgaataaattatttattttatgtaatatttaatgaaaaaaagaaagaaaaacgtgGACAAATCTGTTTCATTTATGCCTTATTTATCTTCCCTAATGCAATCCTTTAACGTTAATAACcgataaataaatgcatttctcTCTTCCATTCAGAATAGACCTGTAAGATTTGCACCTTTTTATAAATACTTCCAAAAGACTTTGTTCTTGAAAAAAGTATCTTGATATATGCTAACTTTAGGTTTGGCGATATGAGAAAGTATTTTTAATAACATTCATAACACAATGCATTTGAAAGTTATGCAGGTTATCGGACATTGTGATGTGCTTAGGACGTTACTGTAATGCCCATATAGTTTGTTCAAGCAGCAGGTGAAAAGGTGAAAAGTTCCCGTTGTTCCTTACGAGAGTTTCCGCAAACAAATACACCGGGGATCGAATAACACCAAGCTGATCTTAAGCACATTACTTTTCTAAATTTCAACCAAAGGACATAATTattgaaacaggaaaaaaaaaaaaagattgacaaGGGAATTCTACAATACAAAATATTTATGTTGCCCATTATACAAACACAAATACTTTAGTTTATTACAGGTGTTTGAACTGAACATTGACACAGTCAGACAATTCTAAATCGAGACACGAGGACAGATCTGGCATACatttatgaaattattattaaactaAGATTTCACAAAGGCTCGGTTAATATATGGATACTGCCATCTATCATAGGGTTTTATATCTGTCTTATTTTAATTGTTTGGAGACTGGTTTCCCATATTTTTTTATGGTACAGAAGATATTTTATCATAGAGTgaacatacgtatatatatatatatatataaatattaactTTCTGGATTGCTGGCGTTAAACTGATCCCGTTTAAGTTATTGTTATATAAGTACGTCCTCACCAGCACATCCCTCTAATGTGTTAATCAATACTACTCTCAAACTGTATAGGATCTATACAATATTGTATCCCTGGGATGAAATGCTCATGTGTTTATCTTTGGATGTCTTTCTCGAATGATTCTCTTGGTCTCCCCATGTACGGAATGAACAGAATTTGTCCTTCAACACGTGAAAAACAACAGCGACCAAGACCCACAAGACCCTAGGAAGAATATAATAATGATTTTTATTATATGGACTGTTGGGGGGAATGGGGGAGATCTGGGTCCACCTGTATACCGTGTATGTAATGTATCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00167	FGF	Fibroblast growth factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002209	Family	Fibroblast growth factor family	Interproscan
IPR008996	Homologous_superfamily	Cytokine IL1/FGF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11486	FIBROBLAST GROWTH FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001934	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0005104	Molecular Function	fibroblast growth factor receptor binding	Interproscan
GO:0005111	Molecular Function	type 2 fibroblast growth factor receptor binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0008543	Biological Process	fibroblast growth factor receptor signaling pathway	Interproscan
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0010628	Biological Process	positive regulation of gene expression	Interproscan
GO:0010634	Biological Process	positive regulation of epithelial cell migration	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0030334	Biological Process	regulation of cell migration	Interproscan
GO:0042056	Molecular Function	chemoattractant activity	Interproscan
GO:0042060	Biological Process	wound healing	Interproscan
GO:0050679	Biological Process	positive regulation of epithelial cell proliferation	Interproscan
GO:0050918	Biological Process	positive chemotaxis	Interproscan
GO:0060173	Biological Process	limb development	Interproscan
GO:0061033	Biological Process	secretion by lung epithelial cell involved in lung growth	Interproscan
GO:0070374	Biological Process	positive regulation of ERK1 and ERK2 cascade	Interproscan
GO:0090263	Biological Process	positive regulation of canonical Wnt signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-