Gene detail

Detailed information of SKAU_T00345930 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00345930	ADAPTIN, ALPHA/GAMMA/EPSILON	CM056391.1	8496577	8525501	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00345930

ATGCCAGCTCCGATCAGACTGCGGGAGCTGATCCGGACCATCCGGACCGCTCGGACCCAGGCGGAGGAGCGGGAGATGATCCAGAAGGAATGCGCTGCTATTAGGTCGTCTTTCAGGGAAGAGGACAACACGTACCGCTGCAGGAACGTCGCCAAGCTCCTCTACATGCACATGCTGGGCTACCCGGCACACTTCGGACAGTTGGAGTGCCTGAAATTGATTGCCTCTCAGAAGTTCACAGACAAGCGAATAGGCTACTTGGGGGCCATGTTACTGCTGGATGAGAGACAAGACGTCCACCTCCTAATGACGAACTGCATCAAGAAtgATCTGAACCACAGCACACAGTATGTACAGGCCTGGCTCTCTGCACCCTGGGCTGCATGGGCTCATCAGAGATGTGCAGAGACCTGGCTGGGAGGAGGTGGAGAAACTGCTGAAAACCTCAAACTCCTACCTGAGAAAAAAGGCAGCTCTGTGTGCCGTCCACGTGATCAGGAAGGTGCCCGAGTTGATGGAGATGTTCCTCCCAGCCACCAAAAACCTGCTCAGCGAGAAGAAACCACGGTGAATTGTCTTGAGCTTCAATGGAAAGAGATTTTGGGCCTAAACAAAGGGAGGAGTGGAAgtgttCTTCACACGTCCGTCGTTCTGCTCATGCTCTCGCACTTTCGAAAGCTGGTCCCACAGCTGGTCCGAATCCTAAAGAACCTCATCATGTCAGGGTACTCTCCGGAGCACGACGTGTCGGGCATCAGCGACCCCTTCCTGCAGGTGCGGATATTGAGATTACTCAGAATTCTGGGACGGAGCGACGATGATTCCAGCGAGGCGATGAACGACATCCTTGCGCAGGTTGCAACCAACACGGAGACGAGTAAAAACGTGGGGAACGCAATCCTTTACGAAACCGTCCTGACCATAATGGACATCAAATCAGAAAGCGGACTGAGGGTTTTAGCTATTAACATCTTGGGGCGCTTCCTCCTAAACAATGACAAAAATATTAGGTATGTGGCATTGACGTCCTTGCTGAAGACGGTACAGACGGACCACAATGCAGTGCAGAGACATCGGAGCACCATCGTAGACTGTTTGAAAGACCTGGACGTTTCCATCAAGAGACGTGCGATGGAGCTCAGCTTCGCCCTGGTGAACGGGAACAACATCCGCGGCATGATGAAGGAGCTGCTGTACTTCCTGGACTCCTGCGACCCAGACTTCAAAGCGGACTGCGCGTCGGGCGTCTTCCACGCCGCAGAGAAGTACGCCCCCTCGAAACGATGGCACATAGACACGATTATGAGGGTCCTGACGACGGCGGGGAGCTACGTCAGAGATGACTCCGTTCCCAACCTCATCCAGCTCATCACCAACAGCGTGGAGATGCACGCCTACACAGTGCAGAGGCTTTACAAAGCACTGCTGGATGACATCTCtcagCAACCTCTGGTCCAGGTGTCGTCCTGGTGTATCGGGGAGTACGGAGACCTGCTGGTGTCAGGACAGTGTGAGGAGGAGGAGCCTATCCAGGTAACGGAAGACGAAGTGTTGGACGTGCTGGAAGGACTCCTGGTGTCCAACATGTCCTCCCCCGTAACCCGGGGTTACTCCCTCACCGCAATCATGAAGCTGTCCACCCGCTTCAGCAGCATCAACCGAATCAAGAAGtacgatCACATGAGGCCTGCCTTACTGGAGCGAATGCCCATCATGGAGAAGACGGCCACTAACGGGCCCACGGAGATAGTGCAGACCAATGGGGAGGCAGAGCCCTCTTCCCTGGAGTCCAAAACCCTGCCCCCTGTCACACAGCCCACGAGCCAGgctaatgatctgttaGACCTCCTTGGAGGAAATGATGTCGTGCCTGTGATCCAGACTGCCCCCCCCCACAAAGCCTGCCTCTGCTGGAGGAGAACTGCTGGACCTACTGGGAGATCTCTCTCTATCAGGTGGGCCGACCCCTGCTCCAGCCCCGCCCGTGTCCATCCCCACAGCCCCGCCTTCCTGCTGGACGGCCCTCCCCTCACAGCCCCTCTTCAATGA

Transcript

SKAU_T00345930

GACACGATATCGTATGGTGACGTCATCACTGACTGCCACGAGGTGAAGTCTGACCGCAGCACTACTCAAGAGAAGATTCCAATTTCTTACTGGTGTCATTACGGCTGAGGATGCCAGCTCCGATCAGACTGCGGGAGCTGATCCGGACCATCCGGACCGCTCGGACCCAGGCGGAGGAGCGGGAGATGATCCAGAAGGAATGCGCTGCTATTAGGTCGTCTTTCAGGGAAGAGGACAACACGTACCGCTGCAGGAACGTCGCCAAGCTCCTCTACATGCACATGCTGGGCTACCCGGCACACTTCGGACAGTTGGAGTGCCTGAAATTGATTGCCTCTCAGAAGTTCACAGACAAGCGAATAGGCTACTTGGGGGCCATGTTACTGCTGGATGAGAGACAAGACGTCCACCTCCTAATGACGAACTGCATCAAGAAtgATCTGAACCACAGCACACAGTATGTACAGGCCTGGCTCTCTGCACCCTGGGCTGCATGGGCTCATCAGAGATGTGCAGAGACCTGGCTGGGAGGAGGTGGAGAAACTGCTGAAAACCTCAAACTCCTACCTGAGAAAAAAGGCAGCTCTGTGTGCCGTCCACGTGATCAGGAAGGTGCCCGAGTTGATGGAGATGTTCCTCCCAGCCACCAAAAACCTGCTCAGCGAGAAGAAACCACGGTGAATTGTCTTGAGCTTCAATGGAAAGAGATTTTGGGCCTAAACAAAGGGAGGAGTGGAAgtgttCTTCACACGTCCGTCGTTCTGCTCATGCTCTCGCACTTTCGAAAGCTGGTCCCACAGCTGGTCCGAATCCTAAAGAACCTCATCATGTCAGGGTACTCTCCGGAGCACGACGTGTCGGGCATCAGCGACCCCTTCCTGCAGGTGCGGATATTGAGATTACTCAGAATTCTGGGACGGAGCGACGATGATTCCAGCGAGGCGATGAACGACATCCTTGCGCAGGTTGCAACCAACACGGAGACGAGTAAAAACGTGGGGAACGCAATCCTTTACGAAACCGTCCTGACCATAATGGACATCAAATCAGAAAGCGGACTGAGGGTTTTAGCTATTAACATCTTGGGGCGCTTCCTCCTAAACAATGACAAAAATATTAGGTATGTGGCATTGACGTCCTTGCTGAAGACGGTACAGACGGACCACAATGCAGTGCAGAGACATCGGAGCACCATCGTAGACTGTTTGAAAGACCTGGACGTTTCCATCAAGAGACGTGCGATGGAGCTCAGCTTCGCCCTGGTGAACGGGAACAACATCCGCGGCATGATGAAGGAGCTGCTGTACTTCCTGGACTCCTGCGACCCAGACTTCAAAGCGGACTGCGCGTCGGGCGTCTTCCACGCCGCAGAGAAGTACGCCCCCTCGAAACGATGGCACATAGACACGATTATGAGGGTCCTGACGACGGCGGGGAGCTACGTCAGAGATGACTCCGTTCCCAACCTCATCCAGCTCATCACCAACAGCGTGGAGATGCACGCCTACACAGTGCAGAGGCTTTACAAAGCACTGCTGGATGACATCTCtcagCAACCTCTGGTCCAGGTGTCGTCCTGGTGTATCGGGGAGTACGGAGACCTGCTGGTGTCAGGACAGTGTGAGGAGGAGGAGCCTATCCAGGTAACGGAAGACGAAGTGTTGGACGTGCTGGAAGGACTCCTGGTGTCCAACATGTCCTCCCCCGTAACCCGGGGTTACTCCCTCACCGCAATCATGAAGCTGTCCACCCGCTTCAGCAGCATCAACCGAATCAAGAAGtacgatCACATGAGGCCTGCCTTACTGGAGCGAATGCCCATCATGGAGAAGACGGCCACTAACGGGCCCACGGAGATAGTGCAGACCAATGGGGAGGCAGAGCCCTCTTCCCTGGAGTCCAAAACCCTGCCCCCTGTCACACAGCCCACGAGCCAGgctaatgatctgttaGACCTCCTTGGAGGAAATGATGTCGTGCCTGTGATCCAGACTGCCCCCCCCCACAAAGCCTGCCTCTGCTGGAGGAGAACTGCTGGACCTACTGGGAGATCTCTCTCTATCAGGTGGGCCGACCCCTGCTCCAGCCCCGCCCGTGTCCATCCCCACAGCCCCGCCTTCCTGCTGGACGGCCCTCCCCTCACAGCCCCTCTTCAATGACATCGCTGCAGGTGAGGCTGGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR017107	Family	Adaptor protein complex AP-1, gamma subunit	Interproscan
IPR050840	Family	Adaptor Complexes Large Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006896	Biological Process	Golgi to vacuole transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0030121	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0035615	Molecular Function	clathrin adaptor activity	Interproscan
GO:0140312	Molecular Function	cargo adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-