Gene detail

Detailed information of SKAU_T00345770 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00345770	DNA REPLICATION FACTOR CDT1	CM056391.1	8172766	8179328	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00345770

ATGGGATTGCCGgAACCGAAGAAGGAGGTTCAAGATAAGGTCGCCGGCGAGGCTACCGCTGTGGAGGAGGTGACGACTTCTACCACGGACGTGGCACCCACAGAACCTGTGGAACAAATCCCCGCGAGCCCTCGAACTCCCAAGCGGAGATCATCTGAGGCAGAGTTTGACCTCAGCTCGGCGTTGTTTTCTGCTACCGCTGGACACAGTTCGGCGAAAAAACGACTTCGGGTCGAATTGGGTCAGGATACGAACTCTAACCCTGCATCGAGATTACCGGACGTGACAACCAAGAAGAAATCGGCCAGAAAGAAGCTTGTTCTTCAGGACGGAGAGCAGGCATCCAGGGACGTGAATAAGACTACTCTGCGTCCATCCAGTCCCCTGCCCGACGACAAGGAGGCAAAGAACCTGGTGAACCGCAGCGGAAGCTCCTCTCCAGTTGGCAACGGGCATGGTGTGGGTAGCCCCCAGAAGGCCGCTCCTAGGAGCAAGGCATTCAGCAAAGAGGATGTGGCTGCTCTCAAGGCTCGTCTCCAGAAGATCCAGGATCAAGGGAAGCGTGCGGCCGTGCCATCCGCAGGGCCTTGCCCCGCTTCCTCTGAGCTGACAGGCAGACTGGCACGAGCTCGGGAGCTGGGAGAAAGGGCACAGCGCCGCAAGGAGGAGAAATTGGCCCAGAAGGCACAGCTTGCAGAGGCAGAGACCGGCACGAAGGAGAGTGAGAGCGTTCCGGCTTACCAGCGCTACCACACCCTTGCCCAGGACGTACCGCCGGGCCTGTCCCTGCCGTACAAGTACAAGGTCCTGGCCGAGATGTTCCGCAGCATGGACACCATCGTGGGCATGCTCTTCAACCGCTCTGAGACCGTCACCTTCGGCAAAGTCAAGCAGGGTGTCCAGGATATGATGCACAAGCGGTTTGAGGAGAATCACGTGGGCCAAATTAAGACTGTCTACCCTTCGGCCTACACGTTCCGCCAGGAGAGGAACATTCCCACGTTCAGCGCGACCGCAAACAAGTCCAGCTACCAGCTGACTGTGGGCCTGTTGTTGAAGAGCGGTGTGCGTCCAACGCTGAGCGCCTCTTGCCTGCTGAAGAGGAGGCGCCTCTTCAATCGCAATCTGGTTGACGTCGTCAAGCAGCACCACAAGGTGTTCCTGGCCTCCCTGAACCCCCCCCTCAGTGTCCCTGATGATAAGCTGACCCGCTGGCACCCCCGCTTCAGCGTGGACGAGGAGGTGCTGGACAAGGCACGCTCCCTCATGACGCCCAAGATGGAGAAGGCCCTTGCCAACCTGGCTCTGAAGACTGCAGAGACTGCTGGCGTTCCTGAGGAGCAGGAACAGGCGCCTAAAACGGCCCCGGCCCCTCCCAGCGCCCTGAAAGGGGTGTCCCAGTCCCTGCTGGAGAGGATCAGGGCAAAGGAGGCTCAGAAGATCCAGGCAGCCATGACCCCGTAACCCCGCACAGACGAACGCCTGCTGATGATGTCACGGCTGGGGGAGCTGGCCCGGATCCTGCGCAACGTTTTTGTGGCGGAGAAGAAGCAGGCCCTGATCATGGAGGTGGCCTGCGGCCGCATGGTCGCCAGCTACCCGCTCCGCCCTCAGCACTGGTGAGATGGAACGGCACCTACGCCTCCTGGCAGAGCTCACTCCCGAGTGGCTGTCCATTCATCCAATCAGGAAGGACTTCTATCTGAAGCTGGACAAGAAGGTGGACCTAAGTGTGGTTGTGGAGAAACTGAACCGACAGACCAGAGAGGAGGAGAAGCTCTGAACTCTCGCACTCCCCTCATTTTTGTTTAATCGAGTGCAATTTTTCTTAGGCTGTCAGACGCTCCAGTTCTGTGATTCTCAAGTTGGCATTGGGCAGTTCCCCATGCATTAGAAAGTCGAAATTGGAGGAGGAACCGAAAGAATAACAAGCCTTTCACTTAGTTGAGGCTTTTTCTGAGGAACAATTTTTTAAAGAACTTTTACACCAATTTAAGATCATGCCTTTttggaattctttttttttttttaaatggacggGGGAGGGGAGTGGGTTTGGTGGTGTTCCAAAAAGAGTTTGTGGTCATTTTGGATGTGACCGTTTCATCAGCAGGGTGTATTCAGACCTGTGAATCCATGAGCCAGTCTAGACCAGATCCTTTTTCTTGCATGAAGTTTGATGTTGCTCAGTTTGACCCTATGGGTCAATTGCAGTGCACtaagctggagtttaaacctcagattTGAACCTCTACACTGCAGAAACTGCATTAGTGGGAACAGCTATCAAAATCTGTGACATAATGCAGCTGTAATGCAAttctgtggtctaggggtttaaatTCCGGCTAAGCACACTGCAAGTTTTGTTACGGTGGATTTGAAATAAAGGCAGCTTCCATTGTCAGTTTGTGTATTCAATCATCTCTGAATTACATTTACAGTTGCACCATTGTAGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08839	CDT1	DNA replication factor CDT1 like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014939	Domain	CDT1 Geminin-binding domain-like	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR038090	Homologous_superfamily	DNA replication factor Cdt1, C-terminal WH domain superfamily	Interproscan
IPR045173	Family	DNA replication factor Cdt1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28637	DNA REPLICATION FACTOR CDT1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000076	Biological Process	DNA replication checkpoint signaling	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0030174	Biological Process	regulation of DNA-templated DNA replication initiation	Interproscan
GO:0070182	Molecular Function	DNA polymerase binding	Interproscan
GO:0071163	Biological Process	DNA replication preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-