Gene detail

Detailed information of SKAU_T00333510 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00333510	SECRETED MODULAR CALCIUM-BINDING PROTEIN	CM056390.1	9241085	9288161	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00333510

ATGTTAATTTTACAGAGACACCAGTGGTGGGAATTAACTCGTTTCAGTTGGAGTGGTTTTAAGGAAGATTCTGACCTGCCTCATAGATGTCCCCCGGCAGGCCATCGACTGGACCCCGGGGGAAAAGCAGACTTCATATTGGTGGAACCCAGACAAAGACAGTCCACCATTGTTGAGGTGTCGGATCAAATGAAAGCACTGTTTGGCACCTTCCCCCGTCGAGTCGGACACGGGACGCTGAGCAGCGGCGTGTCGCCCCGCTCGGCCCTCCGTTCGCACATTGAACGCCTCACACAGAAATCCACGGGTCCACGGtggcTGATCGGCGACCGGGAGGCCCACTGTGGCGTAATCTGCACGCGGACGCAGGGAAAGCCGGTGTGCGGCTCGGATGGGCGGAGCTACGACACCGGGTGCGACCTGCAGAGGGCGAGGTGCAAGGACCGCGCTCTCTCCCTAGCGCACCGCGGTCGCTGCAGAGGTAAAAACTGGGTGAGGATCGACCAGCCCCCTCCACCTCCTGCACCGACATCATCCTTGGAGAGGAAGGAACTCGAGCTGAGAGACGCGGGGCAGTCAAAGTGTCGCGTGGAGCGGGGCCAGGCGCTGGAGCAGGCCAAAAGGCCGCAGGAGTCCATCTTCATCCCCGAGTGCAAGGACGATGGATCCTTCTCCCagGTGCAGTGCCACACCCTGACGGGGTACTGCTGGTGCGTCACGTCGGACGGCAAGCCCATCAGCGGCTCCTCAGCTCACAACAGGACTCCCGTATGTTCAGGGTCAGTAACCGATAAGCCACCGGGACCACCTAACTCAGGGAGAAAAGGCCTGGGGGCAGGCGTGGTGTGGAACTGTGAATATGGGCGGGAGGGGCGGGGGGGCCTGGTTTCCAACCTGACCCTGGGCTCCAAGGTGCTGAGGGACTGGAGGGTGTACAGCCTGTCTATTGACGAAGCTGTGAGCAAAGGTCTCCTCCATGCAGGAGTGTCCCAGGGGACACCTCCTGCACACCTCTCCACTCCAGCCTTCTACGCCGGCAGCTTCAGCATTCCCTCCGGAATCCCAGACCTGCCTCAGGACACCTACGTCCAGTTTCCTAATTGGGGGAAGGGCCAATTGTGGATCAATGGCTTCAACTTGGGTCGGTACTGGCCCAGCAGAGGGCCTCAGGTAACCCTGTATGTGCCAGTTCATATCCTCAGCACGGCTGCACCCAACAATGTGACCGTGTTGGAGCTGGAGAGTGCACCCTGCAGCCAAGGCGCCTGTACGGTGGAGTTCACACACACCCCCATCCTCAACgccacagtcacacacaggagGCGGCTCTTCAACAAAGAGGACCTGTCCTGAACACCACACAACATTAGCAACACAACATTGCACAGCAAAAACACCACTACACAACCGcagcaacacaacacaacattgcTCAGCAAAAACACCACTACACAACCGCAGCAACACAACATTGCACAGCAAAAACTCCACTACACAACCGcagcaacacaacacaacattgcacagcaaaaacaccactacacaacaacagcaacacaaCATTGCTCTGCAAAAACACCactacacaacaacagcaacacaaCATTGCTCAGCAAAAACACCGCTACACAACAGcagcaacacaacacaacattgcTCAGCAAAAACACCactacacaacaacagcaacacaaCATTGCTCAGCAAAAACACCGCTACACAACAGCAACAACACAACATTGCACAGCAAAAACACCACTACACAACAGCAACAACACAACACGACATTGCACAGCAAAAACACTACtgcacaacaacagcaacacaaCATTTCTCAGCAAAAACACCAATACACCACCGCAGCAACACAACATTTCTCAGCAAAAACACCGCTACACGACCGCAGCAACACAGCACAACATTGCACAGCAAAAACACAGCTACACAACCGCAACAACACAACATTGCTCAGCAAAAACACCactacacaacaacagcaacacaaCATTGCTCAGCAAAAACACCGCTACACAACAGCAACAACACAACATTGCACAGCAAAAACACCACTACACAACAGCAACAACACAACACGACATTGCACAGCAAAAACACTACtgcacaacaacagcaacacaaCATTTCTCAGCAAAAACACCAATACACCACTGCAGCAACACAACATTTCTCAGCAAAAACACCGCTACACGACCGCAGCAACACAGCACAACATTGCACAGCAAAAACACAGCTACACAACCGCAACAACACAACATTGCACAGCAAAAACACCACTATACAACCGCAGCAACACCATATTAGATTACACAGAAAAAACACCACTACACAACCGCAGCAACGCCATACAACATTACAAAGCGAAAACACCACTACACAACAGTAGCAACACAACACATTGTACCACATTGCCAACAGCAACATGGCAAAATGGTAAAGTAACACCActgcacaaaacaaaacacaacaacatCTCAACACCACTGCATAACAACTGTAACATCACAGGACAACAGCACTGCAGAACACCACTATGTGCCTTTTCATGAGCATAGTTCCTCTTCGGCATCAGTGATGTCCTTTTTTACTTCTAAATATGTTTGTATCTGGGACAGGTGTACCTcagtgaaatgtgtgtgctttTTCACGGTGTTTGCCGAAGATTGAAATCAACTCAGGGCATAGCCTGTACATAACATGTTTACGTGCGAGAGCTTAATCTGGTGGATGTTCTATATTTGTATATAAGGGATTTGTTTTGTCATCTACTGTACTAGCAGTTTTCTTGCATCATGTTCAGTTAAAGAAGTGTTTGCTGAAATGTCACATGACAAGTCATATAACTCTGCTCCATGAGACAATGAGCACTACTGTATGCACTATTATAAACGACTGCCAAAGAGCTGGAGGAAGGGCTATTTTACATGTGGGGATGGGAGAGTAAAAATATTATGGTCTGGGGTCTATACAGTCTCTTAACCTTAAAGGTGTGTCATGTCCCCTTTAGTTGCATATGTTTTTTATTACGTTTTACTAATTTGGGTTGTAACCTATTGCTTGCTATAAACATAAGCAGAAATTGAATGTACTTTCTTCATGAGGCATTTCACAAATTACAGTGAAATTGGCAAAGTAGTCAAATCGGCACAGAATTAACCCATTATCAAAACAGACGCTTTTGTTGGATCATATCCTTATTAAGGACGTATAGAAATCCCATTCCTAAAGCCAGACATCCCCACCCCAtcatgttgaatgtatttacttttgtgatatatttatatatcacAACTTATTTTAACTTTTGCACTTATGGTGGAGGGTGATTTTAAAATTTATGCAAGGATTTTTGAATGTAATTTTTAACGTGTTATAATTTGATGTAATATCCATTGATGGCATACCGAGCACAAAAAAGGTACAGTCTGTACTGTACAACAGGTACATGTTGGCCATTGGCTCAATCAGCTTTTTCAGTTGGCGCAATCAGGTTTGTGGGTTTTATACACAATCATTCCTGTCTCCTGTCTGTAAATCATCACCTTCTGTCCTTTGTAATGATACTtgataataattgaaataaatcaGTTTGGTTTGATTCAATGTATTTCCTGACTTATGTTTCTCAAAGAAGATTATCATTTGACATGAGGGTGAGTTAGGAGACTGCACCCTTAGAAAGCATGCATGAGTGTTCCCAAACTACTAACTGGATTACCGAGAAGGTAACTGCACTATCTAGATGAGCGAGAAATTGAAGATAAGTTTTTAAGAATAAAATACATATTATAAACAAGCCTTTCAACTGTGCATATTCAACACAGAGATTGCACAACCTTCAAGAGGCAATGGGGCAATAATGACAAGGTGTGACAAAAGCAccattataaataaaatgtaattagaaGTGTCTTTATAAAATGGTATCTGGTACTTTTCCGGTTGAGACCTTGCTGGAACACGTATACCGTAAATGTACAAGTGCTAGCCTCCTCCCTCCAGGGGAAAAGTATATGGAATTGTAATAGTGAAAACATGTTCTTATACAGTGCCTTCTGAAAACTCCGATTTTTATTTGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00086	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF21467	BetaGal_gal-bd	Beta-galactosidase, galactose-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000716	Domain	Thyroglobulin type-1	Interproscan
IPR001944	Family	Glycoside hydrolase, family 35	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR036857	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan
IPR048913	Domain	Beta-galactosidase, galactose-binding domain	Interproscan
IPR051950	Family	Developmental regulator and protease inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12352	SECRETED MODULAR CALCIUM-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005604	Cellular Component	basement membrane	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0050840	Molecular Function	extracellular matrix binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-