Gene detail

Detailed information of SKAU_T00323000 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00323000	T-CELL SURFACE PROTEIN TACTILE	CM056389.1	12992107	13005587	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00323000

atgcttcgaccaagactcctgaagcatagggagaacattaaagacagacagtccagtttcaGTCGTTCACAGCCCATCAGGAGAGAGGAGAGCTCAGACATGGCTACTGACGGGAGCATTACGGCCATCGCCCTCCTGCTCTTCACCACTTTCACCCAGGGTGATTTTGGAGTTTTGGATCGCTCCTATTCGGTCAACGTGACCGTGGGACAACGGGTTAGTCTGTCTTGCCTAATGGAGAAAGAACACAGCTACAGAATCTCCCAGATGGAGTGGAGGAAGCAGGAGGTAGGCGGGGAAAGCAAGATCGCCATTTACAACCCCAGATACGGAACAGAATATTTGTGGAAAAACGTCTCCCTGATTCTGGAGAGTTCCGGGGAGGAGCTGAAGGGTTCCGTTCTGCAAATTGGGGAAGTGGACAGGTGGAACAGCGGGAATTACATTTGCGAGCTCATAACCTTCCCCCACGGGACTGTCAAAGCCCAGACGCACCTGTGGGTCGCAGACGTTCCAGACGTTCGGCTCTCTGCCAGGGTGATTTTGCTCAATCGGGCTGTGAGAGAGGGGGATCACGTGACCATCCGGTGTGACAGCACTCCTTCAGCAGACTCTTACTCCCTCTGGCCCTCCAAGAATAAATCCTCCATCTTGAAAAACAAGGAGGGACGGTTCACACTACCCAACGTGACGAGAAACGACAGCGACCTCTACATCTGCCAGCCTGGGAACTCATCTTCTGGCCTGGCCTTTCAGGGCCTCAACGCCACTGTCAAagttacagtgaactATCTTGATGAGATTGAATGCGACCCCCACCGCAGTATTGATGTTGCTGCTGGCCAGAATGTCACAGTTACCTGTGCAGCCAAGGCATCCCAGAATTCCCAGTACACCTGGAGGAAGGACAACGTGACGGTCTCCACGTCCGGTTCTCTGCGCCTCTGGTCGGTGAGCAGCGAACAGGCTGGGGCGTACGTGTTCACCGCTGTCGTCAAGGATACAGATCTGCAGCGTGAGATGGGGTTTCTCATTGCCGTGCGGACTGGTTCTGGAGACCTCCCATCAAGCATGGCCCCTCCCATCTCCACCACGACCAATGAGAACAGCCACGACGTCACCCTCCGGAGCACTGCTGTATCCACGGCAACGGAAGGAAGCGCAGCAAGCAGCGTCGACTCTCCGCCGACTCGGACCGCGAACTCAGCCGCACCGGAGCGCGATGTCACCACTGGCTCCGCCCGTCCTTTAAACGCCACGGCTACGGCGCCTCCATTTGAATATAACGGCACAGACATCGGGAATACATCGAACCGCAGCCAGCCCACTGCCAGTCCGAACTACGGAGCCAGTTTAACCGCCACGATACACCATTCAATCAGCAGCCGCGGCAACACCACCGACGTAGGTGTGACTAAGACAGAACCCGGAGACAGTACCAGGTACATGGTGCTCATTGTGGTGCCTGTCCTCTGCCTGCTGTTTGTGATACTGTTCCTGTTGTACCGGCGGCACGCGGTCCAGCGCAGGATGGACATGCCTCCTCCCTTCAAGCCCCCGCCACCCCCGGTGAAATACGTGTCCGTCAAAACTCAGGATGAGTGCGGTCCGGCACAACAGCCCTGCGGCAATGGAGCCCAGTGGTggtaggttgactgagcacacatgcttttttacagcaacgccctgttaacacccaccccccaattagcctaacctgcatgtctttgaattgcgggaggaaaccggagtgctgggaggaaacccacgcggacacggggagaacatgcaaacgccacgtggacacggggagaacatgcaaactcctgaTGTTCCATAGACCATTACCATGCACgtgcattttttatatatttttttcagttgataTAAACGGTACAACGTGTCCAATGACAGAAACAACATGTTTAATCAGACGGACAAACAGCATTGCCACACAGAAAGGCGACATggcaaaacacagaaaaaaggTCTAGAGCGCAGAGATAAAATGCTGGATCACAGACAGAACTACACTCGAGCGTTCTTCAACCACTTATTTCTGGGGGCCAGATTCATTTAAAAATTACATGTACGTATAAGCACAATACAGTTTGCGCCTTTTTGCCATTGTTTTAGAAGGTGCTTTCTTAAAATTTATTATGTGATTTAAAATAGCCCTGCCAGGTATTTGCATAATGGCGAGGCTGCTAGGCTATGCTAAAGGTGTTGCTTTGCCACAGATCTGCACTGTTGAAATAACTGACAGAAGTTGTGTTTCCCCACAGAAACTGGACAGAATGTGCTCTTTTTAGGAACAAACAAACTGTTTAAATATGTTAAATCCTGAGTAATATGGATGTTATAACTGACACCCACACGGAGTAAAGGTTGTAATAAAGCCTTAATAAAGGGTTAGTAACCATTTATTACTGACTAAATACATAAGCCCTCAATATGTGAACCGTACATAAAGTGCTACCAATATAGTTTGCTCTGTAAATAAtccaaaatgttttttaaatatttgttcttTTGCAGTGAACTGTTTTAGGATTTTAATAAGGATGTACATTTTACAAATGTAAATGCTATATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686	V-set	Immunoglobulin V-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013106	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR042381	Family	T-cell surface protein tactile	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15317	T-CELL SURFACE PROTEIN TACTILE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0007160	Biological Process	cell-matrix adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-