Gene detail

Detailed information of SKAU_T00306900 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00306900	AMINO ACID TRANSPORTER	CM056388.1	6160125	6188325	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00306900

caccagtCACTATCGCACATGGAGAAGCACTATTGTAGCTTGTAGCGGGCGTGTCTCAGGTGAGTGAAAACGTGCTGATCAAACTGGTGAGTGACTGCAGAGCGGAGTGGGGTGTTTAACATTCTACCCCGAGCAGCGGCAGAGTGGCGCATGCGTGTGCTATTCACCGTGCATCAATGCAGTATATGAGTTCAAGAGTGGGATCTGAGCAAGCCTTTTAAATGGTCACAGAAATGGATGGAGCTACGCGGAACAGAAGTAACTCCGTTAAGCAGGAGCCAGGGGCGCAACAGAAGATGAGAAAAGATGGGAGCAACAAACATGACGATATTCCCGAAAGAGTTACACTTAAAAAAGAAATTGGACTGCTGAGCGCCTGTGCCATCATTATAGGTAACATCATCGGTTCAGGAATCTTCATTTCCCCAAAGGGGGTTCTGGAACATTCCGGCTCGGTGGGGCTGGCACTGATCGTGTGGATGTTAGGAGGGGGAATATCTGCCCTGGGTTCCCTCTGCTACGCTGAGCTGGGAGTTACCATCCCTAAATCGGGCGGAGACTACTCCTATGTTACAGAAATATTTGGAGGCCTGGTGGGGTTTCTCCTCCTGTGGAGTGCAGTCCTCATCATGTACCCCACCACCCTGGCTGTCATCGCCCTCACCTTCTCCAACTACGTCCTACAGCCCATCTTTCCCAACTGTCTTCCACCTTACATAGCCACTCGCATGCTGTCCACCACCTGTCTGTTGTTCCTGACCTGGGTGAACTGCTCCAGTGTGCGTTGGGCCACCAGGATCCAGGACGTGTTCACCGTGGGGAAGTTGCTGGCCCTTGGCCTCATCATTGTGGTGGGACTGGTGCAGATCTGCCGAGGACACTACGAGGGGCTGAAACCGCAGGTGGCCTTCGAGTTCTCAAGGGCGCCTTCCGTTGGGCAGATCGCCCTGGCCTTCCTGCAGGCTTCCTTCGCATTCAGCGGCTGGAACTTCCTCAACTACGTGACGGAGGAAGTGGTTGACCCGCGACGGAATCTACCTCGTGCCATTTACATCTCCATTCCATTGGTGACCTTTGTGTACACCCTCACCAACATCGCCTACTTCTCCTCCATGTCGCCCGAGGAGCTGCTGTCATCCAATGCCGTGGCTGTCACCTTTGGGGAGAAGCTGCTGGGGATATTCTCCTCCGTCATGCCCATCTCTGTGGCCCTCTCCACCTTCGGGGGGATCAACGGATACCTGTTCACCTCCTCCAGGCTGTGCTTCTCTGGAGCCCGAGAAGGACACCTCCCCAGCCTGCTGGCTATGATCCACTGCAAGAGCTGCACTCCGATCCCTGCCCTCCTGGTCTGCTGCACTGCCACCATCGTGATCCTGTGCATCGGAGAGACGCACAACCTGATCAACTACGTCTCCTTCATCAACTACCTCTCCTACGGGGTCACCATCGCTGGCCTGCTTTACTACCGCTGGAAAAAGCCCAAACTGAACCGGCCCATTAAGGTAAACCTGATGGTGCCTATCAGCTACCTGCTCTTCTGGGCCTTCCTGCTGGGTTTCAGCCTCTACTCGGAGCCTGTGGTGTGTGGTGTAGGTCTGGTCATCATGCTAACCGGAGTGCCCGTCTATTTCCTGGGAGTGCACTGGAAGGACAAGCCAAAGTGTATCTATGATTTTATTGAGTCGGCAACTCATGTGGGACAGAGGCTGTGTTTCGTGGTTTTTCCCCAGGTGGACCCGGCTGAAGAGAGCCTGCAGGAATGGATAGACAAACCTGAATCTTGAGTGGCAGTTCcagggattttttttaaaacttttttttattttttttgagtctcttgattttaagattttttttaatttttattttgttttcaccagCTCTGCGACAGGGAAGTAACGGGTGCCTCCCTAACACAGCGAAGCACCCGCTCTCCGTCCGATAGGTCCAGCTCGGGTTCTGCACCATGAGCGGAGACGTGCGTTTTTCACACACCGAGGCATGCGCAGTATTTAATTTTGTTCCTTCTCAGTATCAATACAAGCCAATGCCAACAGTATAACATTGTCatatggactacgttcccctctcctgcacccccccccccccacccccacccacctacGAGGAACTACTAAGTTTCTCCGTCGACTTTCTCCTCGTTTGTTTTTTGCAAGATCATTTCTTTTTGAATTGATCCAAGGTTTTTACTGtgccttacaaaaaaaaaaaaaaaaaaaaaaaaaagttctcctTTATCTGTTGTATTAAGTCATCGCCTATTAATTTGTTCTGGGAATTCTCACATGTAATCCCTAGATGTGTAGATTCGGCTCAGCGGTCTTCCGTAGTCCACTGAGGTCTTCCTGCTTCCTGCAGTATGCCGTGAGTCATGGCTTCCACTTATTTTTATAttcctttaatgtttttaagagaCCAGGAATGGGCTTTGCTAGTGTGGGATCAGGTGTGTGTCCCCTCTCCCTCTAAATGAAGGGTATCAATATAAGTCCAAAACAAGTGATGGAAATCCAGTAAGATCCTGCAGCACTGTCCAAACCATTTCATGCATTAACACATGCCAGATCTCGTGCCCGTAGTTCTTACTGAACTGACAATATGTGGTATATGATAATGACTAACTCCCATGTGAACATGTGTGTACAAAGAGACCCAGCGTCTGGTCGCCTACGCACAACTTAGATGTTTATAGGTAGTGAAGAGACTGTTTCCGTCTTGGGTGGTGAAAATAAACACTGACCAATACACCCTACATTTTCATGTAGACAGTCTAGTTTGCTAGACTTTTAATATTTTATAACACATTTTCTATCACATTTTCTAGTGCAGAGAGACTAACTTCACCAGCTCTCTGCGGCATTTGTGGCCCAATAAGTAACAGTGTCACAAATGGAGTCCTTCCTCACCACCCCTCATCTCGTGGCACAGGAAGTACCGGGCATTGTGGGACAATACTCTCTGCATCATTTCCTGTCTATAGACATTTACAACTCTTTTTACAGagcaggttttttatttttatttttttttgctgtttgttgTTAATTTCTTTTACAATTATGCTTTCGTGTTACTTTGTAACATTAAGAAATGTCATAACCAAAAGATCTACTTAATAGCAATGATTGTCATTGCTACAATAGAGACGTCTAAAGGTTTCTCCCtgggggattttttttccccctcaagggAATGTTTGAAGTACGAGGATTCAGTATTCAGTTTATTGCTCAGTACACTGCCAGAGGAAGTCGGAAGTTGGAAGCCCCGCCCACCGTCTCCAGCTTGCGTACAACAGAAGAATACTTCAGCACCTAACCGAGGGCCTCAGGTGCACCTGTGTTCCTCGAGCACACACTCAACACAATTTCTAAGTTTACGTTGTCCTATGCAGTTTGTAAGCCCGACGGCAATGTACATTCTTGAAAGATTAAGAGATTATTCACTATAAATTATTTGTAAAGCATCAGGTATTTACAGTGGGTTGCATTCCTGGAATGTTTGTTAACTTGTACATGTGTAGTGcacttttgtaaagaaaaataacaataatagcaTAATAAATTTAATACAGAGGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13520	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002293	Family	Amino acid/polyamine transporter I	Interproscan
IPR050598	Family	Cellular Amino Acid Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11785	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003333	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015175	Molecular Function	neutral L-amino acid transmembrane transporter activity	Interproscan
GO:0015179	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan
GO:0015804	Biological Process	neutral amino acid transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0042941	Biological Process	D-alanine transmembrane transport	Interproscan
GO:0042942	Biological Process	D-serine transmembrane transport	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-