Gene detail

Detailed information of SKAU_T00296980 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00296980	PDZ DOMAIN CONTAINING PROTEIN	CM056387.1	23460230	23471763	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00296980

GATGAACATTTATAGAGCCGCAACCAGTACTGCCTGCTTGCTGGTTAGTCGATCTAAGAAAGCCGATGTATGCAACTGAGGACTGGGACATGGATTTACATTAAAACGTCTGTGACTTCTGAAGTtgtctataaaaaaaacaaaaaagaaacactACAATTGATCCGCTTGAACATTTACGCGCGTAATATTATAGTATTAATCCCAACTGAAACATTAAATTGAACTGCTTATTGGGGAATTTTACTTTGGATTACTATTAGACCATGTCATTCAACCGGGAGTATATTCGGCCAAGACTATGTGTGCTGGAAAAGGGTTCAAATGGTTACGGGTTCCACCTTCATGGAGAGAGGGGGAAACCGGGGCAGTTTATCCGGCTGGTGGAACCTGACTCTCCGTCTGAAAGTGCGGGTCTGCGCGCGGGTGACAAGCTGGCTTTCGTAAACGGGCAGAATGTGGAGTACGATAGCCATGTACAGGTGGTGTCCAGGATTCGATCCACAAACGGCAAATTGGAGCTCATAGTAGTCGACGAGGCTACCGAGGAGTTCCTCAAAAAATACAACATGAGGTGTCTCAGAGAATACGCTACTCAAGGCATCCCAGTGCCCACCAGCGAGCGAAGCCACGGAGACGCTGGAAAAAACGGCGCCGCGAGGGAACTGACGCCGCCTCCCGAGGAAAACGGAGCGGTCGCGGGGAAGAAACGCAATTTTAGGTCCCCGCAGGGACATAAGCGTGAGCCGCGGCCTCGTCTCTGTATTTTGAAGAGGGGGGCTGAAGGCTACGGCTTCAACCTACACAGTGAGAGTTCCAGACCCGGTCAGTACGTCCGCCTGGTCGACCAGGACTCCCCTGCCCAGAGATCCGGCCTTCGACCCAGGGACAAGATTGTGCAGGTGAACGGGGTACCCGTGAGCTGCGGGATCACCCCCACAGAGGAGCACCTCACAGGGTCCCTACCTGTGATtagggaggtggaggaggagATTAATGGAAATGGGTCCAAAGAGGAGATGAAGGAGTCCAGTATGGCTGTCAGTCTGTCTCCGTCCAGCACCTCCAATGACTCAGAGgtgtcgGAGGAGTCAGTAGGAGATTACACTCTGAACCTGTCTCTCCAGCAGGCTAAGGAACATGCCCACCAGAAGCGCTCTAACAAGAGGGCCCCTGAAATGGACTGGAGCAAAAAGAATGAACTCTTCAGCAATCTCTAGGCGACTCCCCCTTTGACCTGTTCACCTACCTCCAGAACACTCCccttgtccgaatcagagccctatctactgcgtcctgtgtactagcatactgtatatactgcttactgcatactttagtgacatgcagtatgcaaaaaatatcctccatactattatcagtaaaaatccggaaataagtatatcatccggggatattaagaacactcaattttcagaattttcGTGTAcctaacagctttttaaaaaaaaagtatactcaactggcatactcaatagtaggcgagtgcgctgattcggacacagcctatgattCACAGACTCAATCAGGCACGGTGATGTTCCAGTGTTAACACAGTATTAATGGAAAGGAAATGTAAGACTAACCCACTTTGCATAAACTCTCCGAATATATATTAGCaacaaacaattaaaaacagtgtttaaaaattaatataaaaataaaaatggaataaaTATGTAGAAAGATAAATTATACTCGATATTTCATGTTTGAAAAGGTATAAACACCTATTTTACACTCCTTAGAGATCTTTAAATGCCTCTTCCTCGCTCTTTCTAAAAGATGCACCATTTTCTCATTTTGTGTAAAACATGAACCCTGAGCTATTTATGAATGAACTTATgtgtatgcagtatgtactgaaaTAGTATGTTATACAGTATGGTTAAGTGATTGTGGAATGGATATAACCCATGAGGAAAATCAAGAGgatagaggttttttttttctgtgaaataCTATAAAAGTCTGTTTTGCAAttagaaagtgtgtgtgtatgccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtGACAATCTGAACATCACTGCTGGTCAGAGAAATTTGTTCCAATGGAttgttgtatttttatttcagtcaATCTGCAGTTTAAACTTGATAAGGTTGTTAGAATGGTTCTTAAACTAGGGGTCCAGTGTTCATGTGGACCAAAAGGAACAGTGTTCAGAGTTCAAGGAGTTTTAGTCTGTGAGCTGGGGTTGGTTGTGGTCATCACTGTTTGAGATCTTTGTTCTTCACTGTTGTTCTCATCTGTTATTTCATAGATCCATGGAATaccttttttttgtgctttttcaaaACAGCATTTTTTTCCTCCCACTGTTGAACATTTAAATGCTCTCAGCAACTGCACTGTAGTTGGACTTTGTGCTGGTTTCCCTGTTATGTTTATAgtaatatagcaataatactgtatagtagcctaataAAGTTGTATTTAGATCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF09007	EBP50_C	EBP50, C-terminal	Domain	Interproscan
PF17820	PDZ_6	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR015098	Domain	EBP50, C-terminal	Interproscan
IPR017300	Family	Na(+)/H(+) exchange regulatory cofactor NHERF-1/2	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR041489	Domain	PDZ domain 6	Interproscan
IPR051067	Family	Na+/H+ exchange regulatory cofactor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14191	PDZ DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005102	Molecular Function	signaling receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0043495	Molecular Function	protein-membrane adaptor activity	Interproscan
GO:0060090	Molecular Function	molecular adaptor activity	Interproscan
GO:0072659	Biological Process	protein localization to plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-