Gene detail

Detailed information of SKAU_T00295180 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00295180	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	CM056387.1	19073519	19092273	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00295180

Transcript

SKAU_T00295180

ATGGTGACTGCAAACCCCCAGACGGTACACCACTCTGAAACCCTGCACCATTCTGGAGTCAAATGCTCAATTTCCCTGAAGTCTCTGCACCTCAATATAACACTGGAGATGGAGAATAGAACAAAAACAACGACAGAAATCCCCTTGACCAACGTTTCAGTGGTAAGCTCAAGCTCCTCCCACCTGGGAGAGCTGGACCTGAGCCTGAACGAGCTGCAGGATGCAGGTGTGAGGCTGATCTGCGCTGGACTGGAGGATCCCCACTGTAAGCTGGAGAAACTGGAGCTGAGatggtgtaatctcacagagaAGTGCTGTGGTGCGCTGGCCTCTGTTCTCAGCTCAAACCCGCACCTGAGAGAGCTGGATCTAAGTAACAACAACCTGCAGGACTCAGGAGTGAAGCttctctctgctggactggagagTCCGTTCTGTAGACTAGAAACACTGAGgctGGAGCAGTGTAAACTCGGAGAGAAGGGCTGCGATGCGTTGGCCTCAGCTCTCCGCTCAAACTCCTTGTCTCTGAGAGAGCTGTACCTGAGTTCCAATGACCTACGGGACTCAGGTGTGAAGCTGCTGTCTGCTGGTCTGGAAAATCCGCTCTGTAATCTGGAGATACTGAGGATGGATGAGTGTAAACTCACAGAGAAGTGCTGTGGTGAGCTGGCCTCCGCGCTGAGCTCAAACCGTCACCTGAGAGAGCTGGATCTCAGTAACAACGACCTGCAGGACTCTGGAGTGATGCttctctctgctggactggagggtCCGGTGTGTGAACTAGAGAAATTGGGGCTTTGGGGGTGTGAGCTCACGGAGAGCTGCTGTCACTCATTGGCTGCTGCTCTCGGCTCAAGGTCCTCCCACCTGAGAGCGCTGGACCTGAGTCACAACGACCTCCGGGactcaggagtgaagctgctctccACTGGCCTGAATGAGCCACACTGTAGCTTCGAGAAGCTGGTGCTGATAAAATGTGGCCTCACAGAGAAATGCTGCCATGCTCTGGCCTCAGCTGTCAGCTCAAACTACTCCCACCTAAGAAAGCTGGACTTGAGTCTGAACGACCTGCAGGATTCAGGTGTGATGctgctctctgctggactggaggatccacactgtaaactgcagaaaCTGGAGTTGCAGAGGTGTAAACTGACAGAGAGCTGCTGTGATGCGTTGGCCTCAGCGCTCAACTCAAACTCCTCCCACCTGAGAAAGCTGGATCTGAGTTCTAACGACCTGCAGGATGCAGGTCTTAAACGGCTCTGCGCTGGACTGGAGAATCCGCACTGTAACCTGGAGAAACTGCAGCTGGTGAATTGTGGGGTCACTAGCCGAGGCTGTGCTTCTCTGGCTTCGGCTCTGCGTTCGAACCCCTCGTGTCTGAGAGAGCTGAATCTGAGCCTGAATGGCCTGCAGGATTCAGGGGAGAAGCTGCTCTCCGCTTTACAGAAAGATCCGCTCTTTAGACTGGAGACACTGGAACAAATTATTTTATCACCCGACCTCATTCTGTCCTTACAGGTACTGACAACGTCGAAGACCTGGACTTACATTAGTGCCCAGGATGAGCGGATTTTCGACAGACACATCAGCGAGGGGTCCCGCATAAATACCGGCTCCTACCAGACTCCTCCCAGACTCCTCCCCTTTCTGAGACGGGCAAGAGAAGGCCACCGCCATCACCGCGTGACTACGATGGACGCACTGGACCAGACGCTTTCCCTCTACCCGCTGAATGGCACCATCAACTCCTCCGCTGCACCCCCCCAGAACAGCAGCTTGGCAAACGACCCAACTAAGCCCTTTAGCGTGTTCGATGGCTGCGAAGAGATGGTAGAAGGGATCCTGTTTGACCTGACCGTGCAGGTCTTCAACGTGCTCCTGGGCCTCCCGGCCAACATCATGGTCATGGTGTTCGTGGTGCGGAGCCGCCGGGAGGCCTCCACCTCCGACATCTTCATCTTCCTGCTGGCCGTCATGGACGCCTACTTCGGCATCATGGTGCCCTTCAGCTTCCTCAACCTCTACCTGTGGAAGAGCAAGGAGGGCTGGCGGGCCGTCAAGTTCATGTATGGGGTAAAGGACACCAGCGGGCCCCTCTTTCTGTCCTGCATCTGCCTGGACCGCTTCCTGGCCGTTGTCTTCCCCATCGCCTTCAGCCAACTCAAGGACCACAAGTACCGGGCGGGCTGCTCCGCGGTGGTCCTCCTGCTCACCTTCAGCTACGCTGCCGCCAAGACCGTCGGCGGCCTGCCCAACTTCGAGAAGGTCTTCACGGGCGAGATCCTGGCGGCGTTTGTGCTGATGGTGCTCTGCAACGGCTCCATCCTTTGGGCGCTGCAGCGGTCGCGGGCGGGCAAGGACGAGATGCACCCCATGAAGAAGAAGGCCTTCAAGATGGTTCTGTCCATCCTGTGCATCATCATTATCAACTACCTGCCCCCGGTGGCTCTGTTCCCCTTCCAGGACCACTACACGCCCGATGACTTCCGCTGCTACATCCAGCCGGCGGGCTTCGCCTTCGTCAACGCCAGCTGCAGCATGCAGCCGTTCATCTACCTGTCCCGCGTGGAGAACCTGCCCTGTCACCGGTGTCTCCGCGCCCTAAAGAAGGCTGCCGCCCCTACGCCTGCAGTCACCACGGCAACCGAGGCCACGCCCGCTGAGGCCACGCCCGCTGAGGTCAAGCCCGCTGAGGTCAAGCCTGCAGACCCTTCACCCGCATAAGCACAGATTCTCCACCTCAGTCACTTGAAAGTAGTGATGTAGTGTAGCAGGTAGTGAGGTTTCATGTGTCCCATCATTGCGGTTTGCAGGAGACGACAATTCcgtttttttgatttttttggtTCAGACGGCAAATTCGTTTTTGACTGGTTCAGTCGTTGACAACTCATTGTGGCTCCACCAATTATGGGGCTCATGAAACCTCACTTTCCAATCAGCGCAGTCGGATAAGCGAGCTGGATCCCAGAGAGAAAGCCTGCAGGTGGAAATGGGAGCTACACTTAATGGAAAATATAATCTAAATTAGTGATACCGTACTAATCTTTATACTAATCACTGTGGCAGCTCCACCAACTTTTAGCTTTAAGAAGCTTCTTCCTCCAATCTCGAGTTTATGTGACCCTCTCTGTAATCTTTgtgtacatttaattaatttagaaGACGGTAGGTAATCCTGCGTCCCCAAATGTATcagtgtgttgttgttttttttttgttcgatGAAGTTAAAAACTAGAAATGTCTCAGGGACTCCAGGACCCAGGTTGCCTACCTCTGACTCGGCacttttgcattttatttttagcaccttaattataaaacctttttggTAAACAACGCCAAGCACAAATAACAAAGGGTTACTACAAGCAGCAGAATACATGGCAACACTATATTATATATTTAGTACAGAGCTGAAAGGCCTCAGACGCTACGCCAATAAAGTGAAATTAGATCCACAAAATACTTTGTAATACTCTGAACACAAATTAATATTGCATTAAATACAGAGGGACCTTAAGTAATTTGATGAGGACTGTGAATTCAGAAAGGAAGTACTATAATTACAGTAATTATAAGCTTGTGTCCCAATGCTGCCTGTGATTAGAAAGGTAGGGAGTTCTGTCTGGAATTCTTTAGCTGTAAGAAACACAATTTAGACATAAAGATGGATGGGATTTTTCCTTGCTTGTTTTCCCTTGTCTACCCGGGATACATTTACCTGCTGTTCTTCGAATGTAATCTTTCGTTTTCAGTGTAATCGTACCACCCTAAGGTGCAGCAATGTAGACCACATCAATCAACCTGATATCAGCTTTTAATCGCTTTTATACTTTAGTGAAAACAATGCATTTTagttgtatttacaataattgttTTTAGATTTTAAGCTTCAGTACTTGCCTGTTACTTGTAAAATTGTTATCTCATATATAAAAATTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050637	Family	NLRP family, innate immunity and inflammation regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-