Gene detail

Detailed information of SKAU_T00292480 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00292480	MHC CLASS II TRANSACTIVATOR	CM056387.1	12800987	12830196	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00292480

ATGAGTGACTTGCCTCCTGAGATTGAGCGTCCAGCGTTGTGTGGGGGTGGACCTGCAGGGGGGTGGGCTGTAATTGGCTCCCGTGAGTTCCAAGTCCCCCCGACCGGGGAGCAGACGGTCGGATTTCCCAGCAGCCGCGGCGTCTCCGGGCTCTCGGACATGGTTCCTTTCCAGGACATCCTATGCCAGGTGAGGAGGTGCATGGAGGAGGCGTCGCCGGAGGAGGTGCGGAGCCTCCTGGAGGAGCTGATGGGGGTGCAGGTCCTGTCCAGGGATTACTACCTGTTGCTAGCCCAGGAGGGCGACTCTGAGGACCTGGTTCGCCGGATATCTCTGCCTATTTGGCAGAACTGGGACATGTGCCAAGACACCATCCAGCCACTGCTCCACAGGCTGCCGCCATGCAGGGACCCGGAAAGTCCTTGCGCTGATGGTTCAGAGATGCAAGAAATGGCTTTGGATCTCCCCGAATATCTGGGCGATCCTTTATATGAGGAGGACCTGAGTGcatatttTCCTCGAGAACTTCTGGATATCTTTGGTGAATGCTTCTCCCCCATCCCCTGTGATGATGGCTCTTTGGACATCGACAAACTAATACAGTCCCTGTGTGAAGTTCAAGAAGGATCTTCCACCAAGTCGGAGCCAGCTGAGCAGGAAACGAGCGATGAAAATTCCAGTAAAGTGAAGAGAGgCTTACCTGCCTACATGACATCTGGAGATCCAAAGAAAGCGAAACGCAGGAGGAGAGTTCCTCCAGTTCCCAGGAAACCAAAGAGCAAAGACAGGAAGTGCAGGACCCCAAAGAACCGCAAAAGTACCGTTTCACCAGAGAAGGGGGTTGTGACCGCAGCTCCCCCAGGGATAGTCCGGTTAGGCCCCTGCACTGTCCCACAATTCCTGCACCTCCCGGTGTTCGTGCCAGCTCCTGGTGGTCCATCTTTCCAGGTGATTCAGGCCTTTGCAACTGTCCCTCAGCAGATGGTGAACATCCCCGTGTCCAACACCATGGGCCCGGGGGGCCCCACCTACGTGCTGGTGCCATCGCCCGCGGTTACACCCAGCCACCAGGCCATGCCCCAATCTCCTGTGGCCGGGACGGTGGTTCCCCCCGATCTCGCCGTCTCCACGCCTCTAAGTTCCTCTTCGGACAGTGCAAACAAAACCTGGTCTCTTGCCTCTGGCTCCTCCCAGTCTCCCGTGACAGAGGTACCATCATGTAAAGGATCCCCAAAATCCCCAATCTCCCAAGTGCCACCTGATCCAGTTGTACCCAAATGTGTTGAGAAACACATAGAAATGGCCAAATCACTCATGAGGGAGATGTGCAAAAATGTGACCGCTGAGACCGGCGTGCCGTTCAAGTCACTCTATGTGGATGTGGGCCTGGTCAAGCGGCAGGTGCAGGTGAACAAGACGCGGAACACCAAAAGGTGCCTGGAGAAGGAGCTGGTCGTCCTTGATGATGGCGACCGGAGGCGGGCCACGCTGGAGAGGGGGCGGATCTttgaggagggggcggggcagagGCGCAGTGGGGCCTCCATCGCCCTGCTGGGGAAGAGTGGGGCAGGGAAGACGGCCTTCATCCGCAGGCTGTGCCTGGACTGGGCCGACGGTGACCTCCCGCGGTTCGACTTCCTTTTCCTATTGGAGGGACGGGCCCTGAATGTCCCGCGGGGTGGGTTCAGCCTAAGGAACCTCCTTTTCAACATTTCAGCTAACCCCAAGCTTAGCCAAGACTCTGATGTGGGCGTCAACATGGACGCCATCTTCAGGCACATCCTGGGCCACCCCCAGAGGGTACTCATAATGTTTGATGGTTTCGATGACTTCAGGGACTATGACGGACTCCTGCAGTCCCCGGCCACAAGCGACTCCAGGGACGACTACAGCGCCAAGCAACTCTTCTCTGGACTGTTCCAGAAGAAGATCCTGGCTGGGTGTTCAATGCTGGTGGCGGCCCGAGCCAAGGAGGTCCTGAACCAGCTTCTGGGGAAGGTGGACCAGATCTTAGAGCTTCCCGGCTTCTCACCCACAGACATAGAACTCTTTGCATCCCGCTACCTTGCGGGGTCCCCTTGCCGTGACCAGGCCCTAAAAAGACTGCGGAAAGGCGGCTATGCTCTCAGGCTGTGTGCGAACCCCTTCCTCTGCCGGTCCGTGTGCTACCTCCTGGACAGGCAGGATGGGAACAAAGCGCTGCCGTCCACGCTCACAGGGCTGTGCGAGGCCGTGACTTACCACCGGCTGCGCGCGATTGGCCGAGAgcaagaggaggaggggaagagCGTTTTGAAGCTCTGCCGCGTGGCTTGGGAGGGCATGAAATCCCACAATTCCCAGCTGCCACTCCAGAGTGAGCAGCACGAGCTGGCGGCGGCCGGCGGGATTCTCACCCCTTACGCGCAGTGGCATGGCACGGAGGAGCCCACGGGACGTGGCTACGGGTTCGACCACACGCTCACCCAGAGCTTTTTGGCTGCACTGCACCTGGCCCTGTCCCAGGGTGTGAGCAGCAGGGCCATGGTGGCACAAATGGGCGGCCAACCACGTAAGAGAAGGCTGCAAGCTGACTGGCTGGACGCCACGCTCCGGCTCACCGTGGCCCTGCTCTTCCAGAAAAGGGCGCTCTTTCGTGATTGGTTTGTGGACTCTGGGGGCAGGGCCAGGGGTGGAACCGTGGCGGGTAAGCGGGTCGCGGTGACGGCCCACCTGAAGAGCCTGAAAGCGTGCGAGCTGAGCCCCGCCAAACTCCTGGAGCTGTGCCACTGCGTTTTCGAGACGGGCGACGCCAAACTCGCCAAGTGGCTGAACAAGAGCCTGCCCGACCAGCTCTCCTTCAGCGGTGCGCAGCTGGACCCGCCCGACGTCTTCGTCCTGCACCAGCTCCTCATCCTCGATGCCAGGAGGAGCTTCTCCCTACTAAACCTGCAGGAGACCGCCATCAACATCTCCGGCCTCAGAGAGCTCCTGGGGCTCAAGTGcgtctcctccttcagGGCTTCCATAGGGGATGTGATTAGCCTTTGGGAAGATCTGCAGAAGACGAATGCAGAGGCTCTTCTGAGAAACACAATTTCAAAATTTACCATCAACCCCTTCAAAGCGACACGCCTGTCTCACATTGATGACCTCACTCTCCTCATACAGATTTACAGAGAGAAAAAACTGCCCTGtgactccagccaatcagagcccCTGTTGGACGAAGATGCCTTCAGCATCCCAGCGGTGCGGAACCTTCAAAGGCTGGACTTTGAGCTTGGTGCACAAAATGGTCCCACGGGATTCTTGAAACTGGTAAAGATCCTTCCGGACTTACAGTGGCTGCAGCACCTTGACCTGGAGGACAATAAGATCGGGGACAGCGGGGCGGAGACGCTGGCCGAAGTGCTGCCTGCCCTGTCATCTCTGGAAATGCTAAACCTATCGCAGAACTGTATTGGAGATGGGGGCGTGGCCAAGCTGACTCCGGGGCTTTCCTCCCTCCCTGCTCTGCTGTGCCTCAGCTTGTACAGCAACCTCATTGGTGATGGTGGAGCCCAAAACCTGGCCACAGTCCTGCCCCAGATGAAGTCACTGACAGATCTAGAtgtgaaATATAACAAGTTTAGCGACTCAGGAGCCATGAAGCTGAGCGAGAGCATGAGGAGCTGCCCGTGGATGAAGACTATAGGAATGTGGAACCATTTTATTCCCCACGGTGTTCTTGAGCGTCTGAAACAACAGGACCCAAGGATAAGAACACTCTAG

Transcript

SKAU_T00292480

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR008095	Family	MHC class II transactivator	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47189	MHC CLASS II TRANSACTIVATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0045345	Biological Process	positive regulation of MHC class I biosynthetic process	Interproscan
GO:0045348	Biological Process	positive regulation of MHC class II biosynthetic process	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-