Gene detail

Detailed information of SKAU_T00284210 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00284210	E3 UBIQUITIN-PROTEIN LIGASE RNF180	CM056386.1	33232568	33244576	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00284210

taatatatttaaaaatgtaaggcTGTACCCTGCTGTCAAAATGCGTTACACCTTGTGTAGTTTGGTATCTCTGAGCTGCCGTACTCTATTGTCAACGTCACTGTCCTTTTAACTCAACTTGCATGGCTAGCAAAAcaacagggggggggggagtgttgtttttattttattttagaagcTACAATGGCATTATTGTGTAGGATTTGGTGCTGGTGACCATGGAAATGTCCGGCAAAGTGTCAGTGCTTCGGTGCAGGAAGTGTCGTAAATGCGTGGTGGATACATCTTGCCTGCTCAGGATAAATGCTGTTGATGAAGTGGCAACAGAGTGCAGAATCTGGCACGTGGACTTTGACAATTTGCCCACCTGGATCCTAGCATCTATCCATCAGGCCCGCTGGACCTCGGGGAGACTAAGCTGCCAGCACTGTGGGGCCCGTCTGGGAGGCTTCAACTTTGTCGGCCAAACAAAGTGTCCCTGTGGCCTGGATCTGACCGTCCACCTCTGCAAGAGCCGGCTGGACCAGGACTGCAACTGGCCGGCGTCCCCCGGCGGACCGGAGAGCGAGGGCCGTGTTGTGCATCCGCCCGTTGGAGCAGCTGCCAGAGAGGCCAGAGAGGCCACTCCCCCTCCCACCGCCATTGGCTGTGAGTTTGGACCAATGACTACAGCCCTGGAGATGTGGCCCTGTGAGGCAAACACCAGCCTCTCTAACATTGAGACAGAGATTGAGTCTTCCAGAGGGCCACTTAAAATGGTGCACAGGAAGGGTCTAGCTTCGGATTATGGCAGTGGTGGTGGAGCTAGTATTAGCCTATCCAGACGTTTCTCAGATTCCCAGCAGACACTCCCACTTAGTGAGGTGGCTCAGGCAGTGTCTGCTCTGCCACAGCCACGCCCCTCTGCTGCTGGTCCACCAGAGCAGGAAGAGAGGCCGGAGACCACGCCCATCCAGGAGGTGTACACTCTGAGGAGGCGACGCCCTTCGCAGACCAGCACAGATGAGGGGGAGGAGTTAGAAGAAGGGGCGGAGCAGGCTGCATCTCTTAGGAGCCTGTTATTGTACAGGCCTGTGGCAACCCTTGTGCTGCCCAGactgagcaagagagagaggaatCATCTGAAGAGCCAGAGGAGGAAACAGAGGAGGAGGGAACGCTGGATAGAGAGCCggctgcatgaacacacacagAGCCTGCTGGGAAATGTGACGAGTAGCGAGGAGGAGGACAGGGAGGGCCTCACCTGCGCTGTGTGCCTGGACGTCTTCTTCAGTCCGCACATGTGCCAGCCCTGCGGCCACGTCTTCTGTGAACCCTGTCTGCGAACACTGGCCAGGAACCGACCCGCCAGCACCCCCTGCCCCCTCTGCCGCACCCTCATCACGCATGTGCTCCTCCAGAAAGAGCTGAGCCACACAACAAAGACCTTCTTCCCAAAGCTCTACCTCAAGCGGAAGCAGTACTTCCAGACAGCCGGCTGTGCCCGCTGGCCTCTCCCCAACACCAGGAAGTTCTTCCACTTCTTCGGCGtgTTGCGGCAGCAGCCTACCCCACTGGCACGGCGGCTCTTCCCCCACGGCGGATACGGCCTGGATGCTCTGGACATGGCGGACTCCCGCGGGTGGAGGGTAGACATGGACATGCTCATCATCTACATCTGCTCCATCAACTGGGTCATTGGCCTGTTCGTCTGCTTCTTCCTCTGCTACCTCTACTTCACCTCCTTCTGATGTCCGTACTgaagagcgggggggggggggggagagaagagGTGGAGTTGTTATTCAAAGATCTGAGGTTTGGATCTCTTGGGCAACAATTTTAATGGCGGCTTCAATTATTGAGCCCCTCCCACCTGCATTAACTCCTATAGCTCTTCTGTCACCTGTATCTCACACACATTTCCTCTCAACATACATCCATTGTGGGAGTGTTCTGTCAGTCTGTGTTACAGCCATGTGTTTTTACATGTATGGTCCGATAcatatggggggaaaaaagtatTTTACGCTGTGTGAAGTAGTCATGAACATGAATTTCTGTAAAATTCTGTTCCTGCAAGAAACATGTCACCACTGACTCCCACTTCACAGAGAGGCTGCACAGGTCATGTCATTTACTCCTTCATTCTTTCCTTCACCTTTTCGTcctttcattcatttctttttcTTCAGAATTAAAGTCATGAGGAGAACCACACAGCACATGCCTTAATGATGGCTTCCCCCACGGTCTTGTACAGTTTGAAGATTAAAAAGATTTAGACGATTAAAGTTGAATAGGCCTACTGCTTCTCGCCTCCTCAAAGGTCACCAAAACAACCCGCATCTCTGTCAAAGGTTTACTGTACAATAAAAATCTATGCACACATATTTATCTCTCTCAACTTGCTACCAAATCATCAGAAAAGCTCAGGACTTGCTGAAATAGGTGCCACATTTTGTAATCAGTGGATATGAAGCaaatcacaaacaaacaaacaaaaaaacagcactgGCCACCCGTGTGGTTGTCGGTTCGAGGGGTTTTCTGTATTTTTGCCAGATATCCATAATGTAAAGACTCACCAGTGAATATTGGCTGTTTTTACAGACTAGggccccattacattacattacaggcatttagcagacgctcttatcgagagcatttacatttttacatggtatccatacgcctggatacatactgaagcaatgcaggttaagtaccttgctcaagggtacaagggcagtgtcctacctgggactcgaacctgcagcctttagGTTGCAAGGCCAGCTCTTAACCATCATACTGCACTGCCGTCCCTGACAGGAATAAAGCTTTTGTGTTGGGTGGAGGTGGGTAGGGCACAGTGCCAGGCTGTGATGCCTGGTGAGGAGGGGGGGTCCAGCGCCAACTCCGCTGGTCGCTTTGGATCTCCACCGTCCGCCGAGCGGCCTGGCGCCGCGTATCGTCCCCGGGGCAGATGCTCTCTGGGCACAGGCTACGTGCATTGGCAGCTCGCTGGATTCGCTGGCTGCTTGCTTCCATACGCAGCTCCAGTTTCCCTGTGCAGTCATAGGAAATGGCACACTGTCCTTTACAAAAGGCTCTTTAAGCTTTTAGCCGGTCCCTTTACAAATACTTTCCCTCATAATAGAGAGGGTCTCACTGCTTGGAGCAACGATTggtgtcattttttttttgtgatattaGATATTACATTGGGTTTTTCTCTTTTGATGCGAGTTACTGAAGTGTAGTTACTTGGGTGAAGCTTTCTATGCTTCTGATATGAAGTTTGAAGCTGTCGCTACAGATTGCTGTAAGGGTGTAGGTTTGTGTGTCATTATGTATTCTGTATGTACCACAAGCCTGTTTCTGCAGTCCCCAGAACCAGACCTGTTTTCTTAAATTATTCATTTGTTTGGTATTTAAACAAACATTGCTATTTTAGGGGTTGATTTTGGTACTAAATTGATGTAATTTCTGTAGTTTCAGGAACTATTCCAAAAAGTGCCTTTATTTATatataccatatatatatatatatatatatacacatacacagtgccctccataatgtttgggacaaagacatattctttcttgatttggctctgtagtaCACAATTTTagaatcaaacaattcacatgtggttaaagtgcagattctcagcttttattaaagggtatttgtaTACATGTTGCTTTCACCATGTTGAAATTACAGCacattttatacatagcccccgaTATTTTCAGAAATTCTCAGAAGGGTATTCACTGTAGCCAATCTCCTGGTGCATTGTCCTTTGAGTCATAAAGTTAATTTAAATTTATAATGAATTATTTTCAAAGTCAGACTTACATGTCACTTTAGCACTACGTAAGTTTGGGAGTATAAAAAATAAGGCTTTATAAAATATGTTATGCTGGTGTGTTCTGATATATGTCTGTTTTCTTATTTACAACAGTTGATATAGCTAAATAAATAC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF19332	RNF180_C	E3 ubiquitin-protein ligase RNF180 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR033263	Family	E3 ubiquitin-protein ligase RNF180	Interproscan
IPR045790	Domain	E3 ubiquitin-protein ligase RNF180, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46717	E3 UBIQUITIN-PROTEIN LIGASE RNF180	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0031227	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0042415	Biological Process	norepinephrine metabolic process	Interproscan
GO:0042428	Biological Process	serotonin metabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-