Gene detail

Detailed information of SKAU_T00283350 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00283350	NEURONAL TYROSINE-PHOSPHORYLATED PHOSPHOINOSITIDE-3-KINASE ADAPTER 2-RELATED	CM056386.1	29316235	29349025	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00283350

ATGACGCGCGCGTGCCGGCAGTCCCGGCTGCTATCCGCTGCTCTGCTCCTGGCCCTGAGCGCTTTGATACTGGAGGCAAAGGAATGCGTGTGCAATGGGAAGTCCAGGTGTCACTGTAACGGAATCAAGGGCAACAGGggggAGAAAGGGTATTCTGGCATCGATGGACTAAGTGGGTCGATTGGATTTACAGGATTGGAAGGACGAGCAGGGCCCGTAGGCCCAAAGGGGTCCAAGGGTTTACCTGGAGTTCATGGAGCCAAAGGCAAACGGGGAGCTTTAGGTAAACCAGGATTTGCTGGAGCTCCAGGGTTGCCAgGCACACCAGGATATGTAGGAGAGATGGGCCCTCAAGGTTTCCCAGGATGCAATGGGACAAAAGGGGAAAAAGGTTACCCTGGTGTCCCTGGCAACCCTGGACCCGAGGGACAAACGGGCGTTAGCGGTGCACCTGGACCCAAgGGTGACCCCTCAGATGCGTCCCCCGGTGGACTTAAAGGGCAACGAGGGCCACAGGGAAGTCCTGGCATTACTGGTCAGCTGGGGTTGCCGGGGGAGTTGGGTCCACCTGGGCCTCCAGGGCCTATAGGTGCACAGGGATCATCGGGGCCACCTGGTCCCCCAGGAGAGAAGGGCAGGGAATGGCGGAGTTTGGGTTCCCCAGGCCCTAGAGGGCCGAAGGGTGATCGCGGACCGCCCGGTATTCCAGGACCGATGGGGATTAAGCTATATGCCACAGCGCCCAAAGACCTGAAGGGGGACCCGGGCGATGTGGGTGAAAAGGGCTGTCCGGGAATCCCAGGTCGTCCTGCTGGCCACTCGAGTCTGAAGGGTGTGAAAGGGGACCCCGGGGATCCAGGTGCTCTTCTGCGTCGTAGCCGCAACcggctttttaaaaagaaatccgCTGCAGCTTCCGACGGAGGAGAAGGAGCAGGAAGGAGGCTGGGGAgtgggagcaggaggaggaggaggaggaggaggaggacagagCGGGGAGCAGGAgcaacaggagcagggctggtgCGTGCGGaggagcagcgggagcaggatGTGTTGGAGTGCGCCGGGGCCGTTCTCCGCCGCTCTGCGCCCGAAAACCCGCCGTCGAACCCCGATCCCGCTGCCCAGGACCGGGACCCTTCTaAAATTCCGTCCGGTCGTGTTCAGAGAACAATGAACTCAGAAGACCGGCCCTTCTCCAGATTTCTACAGTATGTTGAGGACAGTGGACTGAGAGCCTACGACGGTCTGGTCCTCCAGAACGCCTCGGACATCGCCCGTGAGAGCGACCGCTTGAGGAATGAGACAAACTGGGCGTACCTGCAGGAGAAACACCAGAAGAAGAGGAAACAGGAAGAAGCAATAAAAAGGATCGGCGAGGACGTTGCCAGGGGGACGGACGGCGCGTATCCAGGGAAACACTTCCGCATGGGCTTCATGACGATGCCCGCCCCCCAGGACCGGCTTCCCCACCCCTGCGGGACGGGCTTCTCCGTGCGCTCCCAGTCCCTGCACTCCGTCGGGGGCGGCGATGAGGACAGTAGCCCCAACTCCCGAAAACAGCCCCCTCCGAAGCCCCGGAGGGACCCCAGCACAAAACTGAGCATCTCCTCAGAGACTGTGTACACAGGGGCCGGCACAGGCAAACTGGGGAGGGAGCTTGATAAGTCTGACGGATCCAGGCCCAGCAACGAGGACCTCCGTCGGGTCCCGCCCCCCAAGCCCAAGCGGAACCCCAACACCCAGCTGAGCACCTCATTCGACGAGTCCTACATCCGTCACCACGCCTCCTCCCAGCCGCCGCGGCGGGACACGCCCCCGTCGCAGACGCAGAGCCCCGCCCGCGACACGGACGAGGACGAGCCCGTGTACATCGAGATGGTGGGCAACATCCTGCGCCAGTTCCGCcgcgacgaggaggaggaggagccgggCGAGGCCGTGTACGAGGAGATGAAGTACCCCGCCCTGGACGACTCCGCCCACGACGCCCTCAGGTGGGACCTGGCCGGCTGCCCCTCCCAGTGCTCCACGCCCACCATCCCCGACGCGGCCACGCCCCGGGGCTCGCTGTGCGATATCCCCGCCCCCTTCCCCAACCTGCTGTCCCACCGGCCCCCCCTGCTGGTGTTCCCTCCCGCCCCCGCCCAGTGCTCCCCGAACTCGGACGAGTCGCCCCTGACCCCGCTCGACGTCACCAAGCTGCCCGTGCTGGAGAACGTCTCCTACATCAAGGCGGGGACGTCGCCCACGTCCGGCGGGGATCCCCAAaactcctccccctcttcctcctcccaccGCAAGGCGGAGAGGGAGCCGCCCGCCACAGCCACCATCACAGCCTCGGGCCGCTCCTCGGCCCCgcccctctcctccgccctctaCAAGTCGTCGTCGTCGTCGGCGCACGGCTACCCGCGCAGCCACTCGGCGTGCCCCTCCCCCGTCAGCGTGGGCCGCTCACTCACGCCGCTCAGCCTGAAGAGGCCGCCGCCCTACGACGCGCTGGCGCCGGGGCCCGGCGGGATCCCGCGCAGCGCCTCGGCCGTGCCGCACTCCTCTGCCAAGGGCTCCGCCCCCCAGCCGGAGGGGGCGGGGCGTCTGTCCGGCTCCATGCAGAACGTCTCGCGGTCGCGAACGCCCACAAGCCCGCTGGACGAGCTCACCAACCTCTTCACCACCGGCCGCAACATGCTGAAGAAGTCCTCCGGCGGCAGGAAGTCCAAGGAGCCGGCAGAGAGCGAGGCCAAGAGCAGGTGTCACAGTGCTGAGCCCATCCCGAGACGGGACAGCAAGGACAAAGGAAGTCATAACGGCGAACACAAGCGCGACAGCAAGGACAAAGGAAGTCATAACGGCGAACACAAGCGCGACAGCAAGGAAAAAGGAAGTTACGGTGGGGAACACAAGCGTGACTGCAAGGAAAAAGGAAGTCACAGTTCTGAGCAAAGGCGCGACAGCAAGGACAAAGGAAGTTGCGGCGGTGAACACAGGCGCGATAGCAAAGACAAAGGAAGTTACGGAGGTGAACACAGGCGCGATAGCAAGGAAAAGGGAAGTCACAGTTCTGAGCAAAGGCGCGATAGCAAGGACAAAGGAAGTTACAACGGCGAACACAGGCCCGATAGCAAGGACAAAGGAAGTTACGGAGGCGAACACAGGCGCAACAGCAAGGACAAAGGAAGTTACGGAGGCGAACACAGGCGCAACAGCAAGGACAAAGGAAGTTACGGCGGCGAACACAGGCGCGACAGCAAGGACAAAGGAAGTTACGGAGGCGAACACAGGCGCGACAGCAAGGACAAAGGGACCAATCACGTGGGAGGACCAGAGTTCGCCAAGGGACACGAAGCGGACGAGTTGCCGGGGCAACAGGCGGTGGCCACGCCCACCCATCTTGTCCACTCCTCCCTCAGTTCCAATTTGCCGCCCGGGAGTAGCTGCCCAGACCTGAAGCCGGTGTCTAAGCTGGGCCGGTCAGCCTCCACGTCCAGCTCAACCCCCCCTAAGGGGACCCCTCAACGGCACGTCCCAGACATGCAGCACAGCCAGGTGGCGCTGGTGCCGTGGGCCTGCGGGGACAGCACAATGATGGAGACCATAGAGAAGAAGCGCAGCCTGTGCCGGGAGATCCGGGCGCGGCAGCGGACCGAGCGGGGCCTGTGCAAGCAGGAGAGTATGCCTATCCTGCCCAGCTGGAGGAAGAGCAACGGCCCGCCCCCTTACTCCACCCACACCACCGTCTTCTGGGACACCGCCATCTGA

Transcript

SKAU_T00283350

CTTACTCCGAGCATCGACCCCCCATTCCCGCAGTGTCCCATTGTAGTTTGTGTTGCGAGGAATTATTTTGGGAGGACATAGAGAGGATCTCTGGGCGAAACGAGcgggaaggaaggaaggagagaAGGTTTGCGTGTTTCTGCGGACGGGTGAGATGACGCGCGCGTGCCGGCAGTCCCGGCTGCTATCCGCTGCTCTGCTCCTGGCCCTGAGCGCTTTGATACTGGAGGCAAAGGAATGCGTGTGCAATGGGAAGTCCAGGTGTCACTGTAACGGAATCAAGGGCAACAGGggggAGAAAGGGTATTCTGGCATCGATGGACTAAGTGGGTCGATTGGATTTACAGGATTGGAAGGACGAGCAGGGCCCGTAGGCCCAAAGGGGTCCAAGGGTTTACCTGGAGTTCATGGAGCCAAAGGCAAACGGGGAGCTTTAGGTAAACCAGGATTTGCTGGAGCTCCAGGGTTGCCAgGCACACCAGGATATGTAGGAGAGATGGGCCCTCAAGGTTTCCCAGGATGCAATGGGACAAAAGGGGAAAAAGGTTACCCTGGTGTCCCTGGCAACCCTGGACCCGAGGGACAAACGGGCGTTAGCGGTGCACCTGGACCCAAgGGTGACCCCTCAGATGCGTCCCCCGGTGGACTTAAAGGGCAACGAGGGCCACAGGGAAGTCCTGGCATTACTGGTCAGCTGGGGTTGCCGGGGGAGTTGGGTCCACCTGGGCCTCCAGGGCCTATAGGTGCACAGGGATCATCGGGGCCACCTGGTCCCCCAGGAGAGAAGGGCAGGGAATGGCGGAGTTTGGGTTCCCCAGGCCCTAGAGGGCCGAAGGGTGATCGCGGACCGCCCGGTATTCCAGGACCGATGGGGATTAAGCTATATGCCACAGCGCCCAAAGACCTGAAGGGGGACCCGGGCGATGTGGGTGAAAAGGGCTGTCCGGGAATCCCAGGTCGTCCTGCTGGCCACTCGAGTCTGAAGGGTGTGAAAGGGGACCCCGGGGATCCAGGTGCTCTTCTGCGTCGTAGCCGCAACcggctttttaaaaagaaatccgCTGCAGCTTCCGACGGAGGAGAAGGAGCAGGAAGGAGGCTGGGGAgtgggagcaggaggaggaggaggaggaggaggaggacagagCGGGGAGCAGGAgcaacaggagcagggctggtgCGTGCGGaggagcagcgggagcaggatGTGTTGGAGTGCGCCGGGGCCGTTCTCCGCCGCTCTGCGCCCGAAAACCCGCCGTCGAACCCCGATCCCGCTGCCCAGGACCGGGACCCTTCTaAAATTCCGTCCGGTCGTGTTCAGAGAACAATGAACTCAGAAGACCGGCCCTTCTCCAGATTTCTACAGTATGTTGAGGACAGTGGACTGAGAGCCTACGACGGTCTGGTCCTCCAGAACGCCTCGGACATCGCCCGTGAGAGCGACCGCTTGAGGAATGAGACAAACTGGGCGTACCTGCAGGAGAAACACCAGAAGAAGAGGAAACAGGAAGAAGCAATAAAAAGGATCGGCGAGGACGTTGCCAGGGGGACGGACGGCGCGTATCCAGGGAAACACTTCCGCATGGGCTTCATGACGATGCCCGCCCCCCAGGACCGGCTTCCCCACCCCTGCGGGACGGGCTTCTCCGTGCGCTCCCAGTCCCTGCACTCCGTCGGGGGCGGCGATGAGGACAGTAGCCCCAACTCCCGAAAACAGCCCCCTCCGAAGCCCCGGAGGGACCCCAGCACAAAACTGAGCATCTCCTCAGAGACTGTGTACACAGGGGCCGGCACAGGCAAACTGGGGAGGGAGCTTGATAAGTCTGACGGATCCAGGCCCAGCAACGAGGACCTCCGTCGGGTCCCGCCCCCCAAGCCCAAGCGGAACCCCAACACCCAGCTGAGCACCTCATTCGACGAGTCCTACATCCGTCACCACGCCTCCTCCCAGCCGCCGCGGCGGGACACGCCCCCGTCGCAGACGCAGAGCCCCGCCCGCGACACGGACGAGGACGAGCCCGTGTACATCGAGATGGTGGGCAACATCCTGCGCCAGTTCCGCcgcgacgaggaggaggaggagccgggCGAGGCCGTGTACGAGGAGATGAAGTACCCCGCCCTGGACGACTCCGCCCACGACGCCCTCAGGTGGGACCTGGCCGGCTGCCCCTCCCAGTGCTCCACGCCCACCATCCCCGACGCGGCCACGCCCCGGGGCTCGCTGTGCGATATCCCCGCCCCCTTCCCCAACCTGCTGTCCCACCGGCCCCCCCTGCTGGTGTTCCCTCCCGCCCCCGCCCAGTGCTCCCCGAACTCGGACGAGTCGCCCCTGACCCCGCTCGACGTCACCAAGCTGCCCGTGCTGGAGAACGTCTCCTACATCAAGGCGGGGACGTCGCCCACGTCCGGCGGGGATCCCCAAaactcctccccctcttcctcctcccaccGCAAGGCGGAGAGGGAGCCGCCCGCCACAGCCACCATCACAGCCTCGGGCCGCTCCTCGGCCCCgcccctctcctccgccctctaCAAGTCGTCGTCGTCGTCGGCGCACGGCTACCCGCGCAGCCACTCGGCGTGCCCCTCCCCCGTCAGCGTGGGCCGCTCACTCACGCCGCTCAGCCTGAAGAGGCCGCCGCCCTACGACGCGCTGGCGCCGGGGCCCGGCGGGATCCCGCGCAGCGCCTCGGCCGTGCCGCACTCCTCTGCCAAGGGCTCCGCCCCCCAGCCGGAGGGGGCGGGGCGTCTGTCCGGCTCCATGCAGAACGTCTCGCGGTCGCGAACGCCCACAAGCCCGCTGGACGAGCTCACCAACCTCTTCACCACCGGCCGCAACATGCTGAAGAAGTCCTCCGGCGGCAGGAAGTCCAAGGAGCCGGCAGAGAGCGAGGCCAAGAGCAGGTGTCACAGTGCTGAGCCCATCCCGAGACGGGACAGCAAGGACAAAGGAAGTCATAACGGCGAACACAAGCGCGACAGCAAGGACAAAGGAAGTCATAACGGCGAACACAAGCGCGACAGCAAGGAAAAAGGAAGTTACGGTGGGGAACACAAGCGTGACTGCAAGGAAAAAGGAAGTCACAGTTCTGAGCAAAGGCGCGACAGCAAGGACAAAGGAAGTTGCGGCGGTGAACACAGGCGCGATAGCAAAGACAAAGGAAGTTACGGAGGTGAACACAGGCGCGATAGCAAGGAAAAGGGAAGTCACAGTTCTGAGCAAAGGCGCGATAGCAAGGACAAAGGAAGTTACAACGGCGAACACAGGCCCGATAGCAAGGACAAAGGAAGTTACGGAGGCGAACACAGGCGCAACAGCAAGGACAAAGGAAGTTACGGAGGCGAACACAGGCGCAACAGCAAGGACAAAGGAAGTTACGGCGGCGAACACAGGCGCGACAGCAAGGACAAAGGAAGTTACGGAGGCGAACACAGGCGCGACAGCAAGGACAAAGGGACCAATCACGTGGGAGGACCAGAGTTCGCCAAGGGACACGAAGCGGACGAGTTGCCGGGGCAACAGGCGGTGGCCACGCCCACCCATCTTGTCCACTCCTCCCTCAGTTCCAATTTGCCGCCCGGGAGTAGCTGCCCAGACCTGAAGCCGGTGTCTAAGCTGGGCCGGTCAGCCTCCACGTCCAGCTCAACCCCCCCTAAGGGGACCCCTCAACGGCACGTCCCAGACATGCAGCACAGCCAGGTGGCGCTGGTGCCGTGGGCCTGCGGGGACAGCACAATGATGGAGACCATAGAGAAGAAGCGCAGCCTGTGCCGGGAGATCCGGGCGCGGCAGCGGACCGAGCGGGGCCTGTGCAAGCAGGAGAGTATGCCTATCCTGCCCAGCTGGAGGAAGAGCAACGGCCCGCCCCCTTACTCCACCCACACCACCGTCTTCTGGGACACCGCCATCTGATTGGCTCTCGCTTTCACTGCcacgcacaccccccccccctacaaaaAGCCGGGAGCCAATCAGAGAGGACATGGCCGAAGAGTGGGCGGGTCTAATGTAGCAAATAAATGAGTCTGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF15439	NYAP_N	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter	Family	Interproscan
PF15452	NYAP_C	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR026722	Family	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1/2	Interproscan
IPR029353	Domain	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter, C-terminal domain	Interproscan
IPR039482	Domain	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22633	NEURONAL TYROSINE-PHOSPHORYLATED PHOSPHOINOSITIDE-3-KINASE ADAPTER 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0014065	Biological Process	obsolete phosphatidylinositol 3-kinase signaling	Interproscan
GO:0043491	Biological Process	phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan
GO:0048812	Biological Process	neuron projection morphogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-