Gene detail

Detailed information of SKAU_T00282190 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00282190	TRIPARTITE MOTIF-CONTAINING PROTEIN 2-LIKE PROTEIN	CM056386.1	24469347	24481963	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00282190

ATGGACGATGCCAGCTCCCTGGATGAAATGATCTCcctgtccattaaagtggacaatCGGTTGCGGGAGCGCCAGAGGGAGAAGGTGGGTCGTGTCGCCGCTACAGACCATCTTCCTCGGCACGTCGGCAGCACACTCCGAGAGTACCCTGTGGTTTTACAAGATCTGACATTGTCGCTAAGCAGGTGCCTGGTGTGCCCACTGCAGAAGGCCATGGCCGCCGCCGCTTTTCTGGATCCGGAGCTGGTTCGGGAGGTGCTGGAGTGTCCCATCTGTCTGGAGACCTACAACCAGGACCAGCTGCGGCCCAAGCTGCTGCAGTGCGGCCACACAGTGTGCCGGCAGTGCCTGGAGAAGCTGCTGGCCAGCACTATCAATGGTGTCCGCTGCCCCTTCTGCAGCAAGGTGTCCCGCATGAGCAGCATCTCACAGCTGGCCGACAACCTGACGGTGCTGAAGATCGTGGACTGCGCCAGCTCCAGCGCCTCAGCCTCCGGGCTCATGTGCAGGTCCTGTAAGAACAGGTTGCCTCGGCAGTACTGCCCAGACTGCGGCCTGGTCCTCTGCGACGCCTGCAAGGACGAGGGCCACCAGCAGCAGGGACACGGCGTGCTGAGCATCCGCTCAGCCGCCGAGCGCCGCCGGAGGGAGCTGGGCGGGAGGCTGGTGGCGCTGCGGGAGACCATGGCGTGTATCCAGAAGAAGAAGGCGGCCATCGACAGTGCGTCCAAGTCGCTGCGGCTCAAGTACAAGGCGGTGCAGCAAGAGTATGCGCGGGCGGAGCTGCAGCTGCAGGAGGAGCTGGGCCGCTCGCGGCGGGCTTTCGCTGCCTCCCTAGCCGAAGTGGAGAAGCTCAACGCCCAGATCCTGGAGGAGCAGACCTACCTGCTGAACATCGCTGAGGTTCAGGTGGTCTCGCGCTGTGACTACCTCACCACGCGTATCAAGCAGACCGACATGGCGCTGCTGGAGGACGGCGGGAGCAGTGAGGAGGACGAACCCGACCTCAGGGGTGGCCTGCCAGCCCAGCTCAAGCTTCAGGACCCTGAGCTGCTCAAAACGGAGCAGGACAAGCCCCTGGATGTGGGCCGGCTCAACACCAAGCCCCGCACTGTCAACACGGACGATGAGGATGGGCAGGAGCTGCCGTCGGCGCCACCTCTGGACCTGTACCGCGACATCGACATGATCACCACCACGGAGGAGGCTGTCTGCGCCTCGCCCGGCAGCTTCAAGTCGAAGTCGGTGGATGAGGGTGGAGCGACGGGCGGAGCCTCTGGCGGGACGGGGGTGGGGTCGGGCTCCCAGCTCTGCCAGTTTGTGAAGAAGATGGGGTGCAAGGGGAACCTCCCGGGCATGTTCAACCTGCCGGTGAGCATCTGCGTCACGCCTCAGGGGGAGGTTCTGGTGGCCGACCGAGGAAACTACCGGATCCAGATCTTCAACCGCAAGGGCTTCCAGAGGGAGATCCGCCGAAACCCCAGCAGCATCGACAACTTTGGGCTCATCGGTGTCACCGACAACTACGACAACTCGGTCAAGGTGTACACCTCTGAGGGGCACTGCGTGGCCTGCCACAAGAACCAGCTCATCAAACCTTGGGGCATTGCCGCCATGCCGTCCGGGCAGTTTGTGGTGTCCGACGTGGAGGGCGGGAAGCTTTGGTGCTTGGCGGTAGACCGCAACGTCGGGGTGGTGAACTACAACCGGCTTTGCTCGGCGGTGCGGCCCAAGTTCGTGACCTGCGACCCCTCGGGGACGGTGTATTTCACACAGGGCCTGGGCCTGAACATCGAGAACCGGCACAACGAGCACCACCTGGAGGGCGGCTTCTCCATCGGCTCAGTGGGCGCCGACGGCCAGCTGGGCAAGCAGTTCAGCCACTTCTTCTCCGAGAGCGAGGACTTCCGCTGCATCACGGGCATGTGCGTGGACACCAATGGCGACCTGCTGGTCACGGACAGCGGCCGCAAGGAGATCCTGCGCTTTGCCAAGGAGGGTGGGTTCAACGTGCTGATCCAGGAGGGCCTCACCTGCCCTGTGGGCGTGGCTGTAACCCAAAAGGGCCAGCTGCTGGTGCTGGACTGCTGGGACCACTGCGTCAAGGTGTACTCATACCTGCAGCGGCGACGCTCCTCCACGTGCTAG

Transcript

SKAU_T00282190

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR047051	Domain	TRIM32, B-box type 1 zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25464	TRIPARTITE MOTIF-CONTAINING PROTEIN 2-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070936	Biological Process	protein K48-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-