Gene detail

Detailed information of SKAU_T00265460 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00265460	INNER MEMBRANE TRANSPORTER YGJI-RELATED	CM056385.1	16104080	16119129	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00265460

ATGCACCAATGGGTCTGCCCTGGCCTGGCTGCCTTCCCAGATTTCTTTGCAGCTGGTCTTATCATGTTACTGGCTGGTATCCTTGCATTTGGTGTCAAAGAGTCTTCGACTGTCAATAAGATCTTCACTGGCATTAATATAGCAGTGCTGGTCTTTATCATCATTACTGGCTTCATCAAAGGAGACATTAACAACTGGTATATCAGTGTGGACACTATCCTGGACACTACGTTACTCATGCAAAATATGTCCTCTACTGCGAATGTGACAAGTGATTTTGGAGTTGGTGGATTCTTCCCTTTTGGAATGCAAGGGACATTGGCGGGAGCCGCAACCTGCTTCTATGCTTTTGTTGGATTTGACTGCATTGCCACCACAGGGGAAGAAGTGAAGGACCCTCAGAAGTCCATCCCATTGGGCATAGTCTCTTCCCTGCTCATCTGCTTCCTTGCCTACTTTGGGGTTTCCGCTACTCTGACACTCTTAATGCCCTACTACTTATTGAGCGCTCATAGCCCCCTGCCTGTGGCCTTCACTTATATCGGTTGGGCTGCAGCCAAGTATGTGGTTGCTGTGGGTTCCTTGTGTGCACTTTCTACTAGTCTACTGGGTTCCATGTTTCCAATGCCCCGAGTCCTCTTTGCCATGGCCAGGGATGGGCTCCTTTTCAAACCTTTGAGTAACATCAGTTCTCGACAGAGTCCAGTAGTAGCTACACTTTCATCTGGCATTGTGGCAGTGCCTAAATCTGGGGATCTCTCAAAGCCAGACAACTACCGTGGCATCAGTCTGACCTGCGTCATTGCGAAGATGTACAACCGCATGATACTGAATCGGATACGGGGTGCCATTGACCCATACTTGAGAGAGGACCAGAATGGCTTCCGAGAGGGGAGAACCACCGTAGCCCAGATCTTCGCCTTAAGGAGGATCATCGAGGAGGTGAAGAGGAACAACTTGACAGCGGTGCTGTGTTTTGTTGACTTCAGAAAGGCATTTGATTCAATACACAGGGGCGTCATGATGAAAATTCTTAAGGCCTACGATGTTCCCCCCAACTTACTCTGGGCCATTGGGACCATGTATTCAGGCACAAGAGCAAAGGTTGTGACCCCTGACGGCACTAGCGAAGAGTTCGACATCCTGGCAGGAGTGTTGCAAGGGGACACCCTTGCCCCCTTCCTCTTCATAATAGTCCTGGATTACGCACTAAGGCAAGCTATTGAAGGACGGGAAAAGGATCTAGGCTTTACTATAACACCTAGGAGAGTGGAAAGGGAATGTGCCAAGGTTGGTCTTGGGCTGAATGCCAAGAAAACCGAGGTCATTGCCTATAACACACCGGACCATCTGCCTCTGAGGACAACTGGGGATACTGCTCTGAGGGAGGTCAGTGACTTCAAGTACCTGGGCTCCTGGGTCAACTCAACGGAGCAGGACCTAAGAGTGAGGAAGGCGCTCGCATGGAAGGCTCTAAACGGCATGGCTAGTGTATGGAAATCCAACCTCCCCCGCGAAGCCAAGCTCCACTTCTTTGATGCCACCGTAGAGGCCGTTCTTCTATATGGCTGTGAATGCTGGACCCTAAAGCCCTCCCTGCAGAAGTCTCTGGATGGGTGCTACACAAGAATGCTGCATGCGGCACTAAACATCGACCAGAATGCGCACGTTAACAATATGCGTCTGTACGGAGGACGGCCAAGGCTAAGTGAGAAAATAGCAGCTAGGAGAATGAGGCTGGCTGGACACTGCCACAGACATCGAGAGCTTCCAGCCAGTAAGCTGGTCTTGTGGGAGCCAAGCCCAGGGCTCGGGCGACGGTCACGGGGGCGGCCCACACCAACTTTCGTGGACATACTCAAGAAGGATGTGGGAGCGGAAACTACTGGGGAGATCGCTGGATGCATGGAAGATCGGGTtggctggagacgtagatgggAGGCCCATCTGAGGACGACCCCAATGATAACTGCACTGGTTGATATGATGTCAATTGGAACACTCTTCGCCTACACTCTTGTGGCAGTTTGTATTCTCATACTTAGGTACCAGGACGATTGCATTGGAGACTCCAATAATATGCAAAAGACAGAAACAAGCTCAAAGTGGAGGTTTTTAAATCCTCCTTCCCACCCAACTTCTGAAACTTCAAAAAATGTATCAACTTGTACAATGCTCATTATTATGCTGATTATCATCCTCAGCCTATTTTTGAGTAAGGCTATAAAACACCTGCTGAACCAAGAAGTGTGGAGTCTTCTTTGTGTCTCAGTCATTCTTCTTATTCTAGTCCTTAATGTTATTATCATATGGAGACAACCTCAAAGTCCCACCAAAGCTGCTTTCATGGTGCCATTTTTGCCAGTACTCCCTGTAGTGAGTGTTTTTATCAACGTCTACCTCATGATCCAGTTGGGCACAGACACGTGGATTCGATATGCTGTCTGGATGGCAGTGGGACTATTCATATACTTTGGTTATGGTGTTCACCACAGTGTGCAGAAACAAAGGCTTCTCAACGCAAGCAATCGGGTCGATATTCAAACCATTGAGACCAAAGCAGAAGAGGATGGAGTAAAAAGAGAAGGCTTCTGA

Transcript

SKAU_T00265460

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00324	AA_permease	Amino acid permease	Domain	Interproscan
PF13906	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR004841	Domain	Amino acid permease/ SLC12A domain	Interproscan
IPR029485	Domain	Cationic amino acid transporter, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000064	Molecular Function	L-ornithine transmembrane transporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006865	Biological Process	amino acid transport	Interproscan
GO:0015171	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0015181	Molecular Function	L-arginine transmembrane transporter activity	Interproscan
GO:0015189	Molecular Function	L-lysine transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0097638	Biological Process	L-arginine import across plasma membrane	Interproscan
GO:1903352	Biological Process	L-ornithine transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-