Gene detail

Detailed information of SKAU_T00265090 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00265090	SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2	CM056385.1	15029148	15071488	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00265090

ATGATGAATTGCGTGTGTCTCCAGGACTCAGGCACCTCCAGCCTATGGGGGAGCAAGGTAGACTTTATGGAGCTGAAGTGCAGCTTCTGGGAGCTTAACGCAGGCTGCACTGTGCCTGCGCTGGAGGAACTGAGCGTGTGCGTGAGCCTGTGGAGGCAGAACAATTCACCGCAGTGGACGGCGTTCGTATACAAGCAGCAAGATGAGGAACGGTTGGAGCTGGGCCTGATGGGCACTGCGACGAGCCTGCAGGTGTGTCTTTTTGGGCACAAGTGGTCCGCACCCTACAGCCTGCCCCTGCAGGCCTGGCACACTTTGTGCCTCACCTGGTCTGGGCACCTCAGTCGCCTGCGCCTCTATGTCAACGACACCCGGGTCCTTAACGCCCGCGTCCACTGGCACGAGCATGGCCGGCCctgtcacctgccgcccggcGGCATTCTCACCCTGGGCGTGTCCCGCAGCTTCACAGGCAGGGGGATGGAGGTGGAGATGGGGACCGGCTTCCAGGGGGCCATGACCCAGTTCCGCATGTGGGGGAAGGAACGCAGCCCCCAGCAGCTGTCAGAGCTAAGCTGTACCGAGGGGGACGTGGTGCGCTGGAGTGCCCGTGACTGGAACATAAGTGGCTGCCAGGCCGTCTCCGAATCTGACCTGAAGTGTGCCTGGTCTTTCTTTGAAATTCAAGTGACGGTTCTCATCACCCGCTGGGATGGTAATGCCATTAATGCCCAAGCTGCCAAAATTTTTGTGAAGAAATGGCTTCAGAGCGGATTCCATTCCAACATTACTGTGTGCAGTTTATCTGTATCTTTTTCAAGCCAGGTTTACTCAAGCGACAGTCATATGACAGACAGCGAGGAAAGTCAGGAAGGAAGAAGATCAGGCATCTCACCAGTCCAAAGCCTATTTGACTGCATAGTGCATGTGAGCGTGATTCCCAAGACTGATGTCAGTAGAGTGCAAGAAGAAGTCTTCCAGCTGCTCATCATCATGTATGACTCTTACCCCCTGACGggtgaaacaaaaaccagcagcatCATTGTTCACCCTGTTGAGGCCTTTCCCTTGGTGACTGACTCTCCTGTTACAGTAACACCGAGTTCCACCATGGAAGCCACTTCTCTGACCTCACTCACCACTAACATGGTCCCAGTCACCTTCTACAGGGTCAACCTGAATGTGACTGTGAGTACTAGAGCTGCCTATGACCCAGGAAACATCATTCAGATCTGGCTTTTTACTGCCTTGCCAGGGAACCATATGTTGATTTTAAACTTCAGACTGCTGACAAGGACCCACAGTCAGATGGAATTTAGGACCCCAGAGTCAGAAGAAACGTTGACTTTGGCCAGGATGAACAGCTATGGCTGTACATTCCAGGTGCAGGTGAACACATTAGATGCTGCTCAGACGGAGCAGCTCATTCGAGTCCTTCTGAAGGAAGAATTCAGCCTTGGACCCATAAACATGCATGCAGATAGTATCCAGATATCTCAAATAGAACCTGGGTCTTGCCCTGAGCACAGCCAGCAAACCAGACAAGGGTTCTACGTGTGGCCTGAGACCAAGGTTCAGTGCAAGGCCACTTTGTCCTGTGAAGGGAACTGTAGCCTGACAGTCTCCAGGGACTGTGAATTGGACGCCGTGACTGAACAGGCCAAATGGACTGCCCCTGACCTGAGATTATGCCCATTTATTGTGATGAGCATTTCGGATCTGCATCATATCCCTGTCACCCACAACAATTCAGTGGATGTGGTTGATATGATATTGAATCTGACCAGTCAACACACAGTACTGAGCCACACTGAGCTGGGCATCATACTCAACAAGCTTTCAGTGGTCCTGGAGGTCGCCCAGGTGACTCCGTCTCTGGGCAAGTCCATGGTTCAAGTCATTGCAGATATTCTGGAGTCCAACaccaacctgtccaatgtcaccaaCCAGATTTTGAACATCATTGAGGACATTGGGGACCAGATTTCTTTCAGTGGGGAGTCGTACAACATGATCACCCCGTCATTGGCCATCTCACTTGTCAACGTGGACCCCGGTCAGTTTGACGGCATCACCTATGGGGTCTCCTCTGCCTTGCAGGACCTGGAGATATTCATCAACAAGGATCCAATAAATGACACGGTGGCGTTCATATCCCTGCCCCGTGAGGTGGAGAACAGGTTTCCCCAGCAGAATGAAACCCAGCTGCGCATTCAGTTCCATTTCTATGGTGTTCTTCAGCTCTTCCAGGACGCAAAGAGTGAAAAGGAGCTCAACACCTACGTAGTGTCTGCCAGTGTCACTAACGCCACCATCAGGGACTTGGAGCAGCAGGTCGTCGTGACCCTCCGCCATCTCAAGCCCGTGCGCCCTAAGGACAAGGTGGAGTGTGTTTTCTGGAACTTCAGCAAGAATGGATTGGGTGGATGGGACCCCAGCGGTTGCTCGAAAAACAACACCAGCGGCGACTACACCACCTGTGTGTGTGACCACCTCACTCACTTTGGAGTGCTCCTGGATGTGTCCAGGACTTCGGTGAGTGAGGAGAATGAAGAGATTCTGACCATCATCTCCTACCTGGGCTGTGGCATGTCTTCCATATTCCTGGGTGTCAGTGTACTGACGTACACGGTTTTTGAGAAGCTACGCAGAGACTACCCCTCTAAGATCCTGATCAACCTGTCCCTGGCCCTGCTTGGGCTGAACCTGGTGTTCCTGGTCGACTCCTGGCTCTCCTCCTTTAACATCTATGGCCTGTGCATCTCTACGGCTGCCTCCCTCCACTACTTCCTGTTGGCCTCCTTCACTTGGATGGGCCTGGAGGCCGTACACATGTACTTTTCCCTGGTCAAGGCCCTGAAACCTCCGGATAGCTCAGAGTTGTTctgctGGCTGCAGGATGATGTGGTCTTCTATGTGACGGTAGTGGCCTACGTTCTCCTCATCCTGCTGTGTAATGTGGCTGTCTTCGTGGTGGTGCTTGTTCAGATCCATAACATTCAGGCCAACAAGCCTGCAGGCAGCCGCCATGGGCTCTTGCATGACCTACGGAGTGTGGCCAGCCTCACCTTCCTGCTTGGCCTCACCTGGATGCTGGCCTTCTTCGCCTGGGGGCCTGCCAAGGTGCCACTGCTCTATCTCTTCTCCCTGCTCAACAGCCTGCAAGGATTTTTCATCTTTGTGTTCCACTGTCTGATGAAGGAGAATGTGCGTAAACAGTGGAGGGCCCATCTGTGCTGTGGCCCATTTAGACTCAGAGAGCACTCAGACTGGAGCCAGACCGCGACGGGCGGAGTCAAGTCCAGGCCGAACCCCCTGGTCCATACGCACTCCGTGAAGTCAGCCAGGTCTGACCATTCCAACTCTACCTCCAACTCCTCTGTCTCGGCTCAGAGGCTGATTTCCACCAGGAGACCTGACCTGGAGCTGGTGTACGAGAATCCACTGGCGCTTCCTCGTGCTCAATACTGCAACCCCTCTGCACCCCCAGAAGGCACCTCTTTCCCTGGAGAGACAGACTATGGATTTCCTTCCTGGCCACCCAGAGACAGCTCCTCCTGTCTCAACCCCTACGCCATCTACTGGCTCAACCGCTCCCCTGCCCCGTCCACTGCTGCCAGGCCTGCATCCCCCAGCAACCATGCCATACGTGGCACCACCTCTGCCACCAGAGCCTCCCTTCCTCTCACTGAGGTGAAGAGACAACCAGAGGAAGAGGCCTGGTGGACAGATTCACCCCCTTTTCGTGGATGTTCAAAGATGAGTGGGAACTCGGATGGGAACAAGGAGTTTGACGAGCAGCTGCGGATGCAGCAGCTGTACGACGGACAGCGGGTGGAGGACGGAGAGGACCCTTACACGTACACGGACCCGGAGGATGGCACGGTTTACGACTGGGACCGCGACAAGAAGGCCTGGTTTCCCAAGATAACGGAAGATTTCCTGGCGGCCTACCATGCCAACTACGGATTCAACAAGGACGGCGAACACGACCCGTCTGCTTCAGGGGCCCCCAAGGAGGACCCGCCGGCAAAGCCTGGCGCCGTGCCCGACCCGCCAACGGCGAGCGCGGACGCGACGCAGGGCGGAGATGGCACCCAGCCCACAGACACTAATAAGAAAGGAGAGAAACGGAAACCAGACCCAGGCTGGTTCGACGTTGACAAAGACAAAAATACAAACGTATATGTTTCAGGCTTGCCACTGGACGTCACTCCTGATGAATTTGTGCAGATCATGTCCAAGTGTGGCATTGTCATGCGGGATCCCATCTCAGAGGAGTATAAGGTGAAGCTGTATAAGGACAACCAGGGGAATCTGAAGGGAGATGGGCTGTGCTGCTACCTGAAGAAGGAGTCGGTAGCCCTGGCAGAGCGGTTGCTGGATGAGTCAGTGGTCAGAGGCTATCAGCTGCATGTGGAGGCAGCGCACTTTGAGCTCAAGGGCGAGTATGACgccaaaaagaagaagaagaagagcaaggAGTACCGCAAGAAGATGCAGCAGCAACAGAAACAGCTGGACTGGCGGCCGGAGAAGAAAGGCGAGGTGCGGAAGAGGCACGAGCGTGTGCTTATCATCCAGAACATGTTCCACCCCAGCGATTTCGAGGAGGACCCCCTGGTGCTGAATGAGATCCGCGATGATCTGCGAGTAGAGTGTGAGAAGTTCGGGCAGGTGAAGAAGGTCATCATCTTCGATAGACACCCAGACGGTGTGGCCTCCATCGCGTTCAAGGAGCCCGAGGATGCGGACGTGTGCCAGCTGGCTCTGGACGGGCGCTGGTTTGGGGGAAGGAAGCTGTCAGCCCAGTTGTGGGACGGCGCCACAGACTACCAGgtggaaGAGACTAACCGTGAGCGAGAGGAGAGGCTAAAAGGGTGGGCTAGTTTCCTGGAGGACGGCAAGAAGAAAGGAGCGGCAGAAGGTGACCCCGGTAAAGACGACAGCACCGAGGGAGCAGACAAGGGCCCGGTCCAGGGGGACCCCCAAACTGGCACGGAAGAGCCTCCAAGCGCACCGGAGGAGCCTGCGCCAGAAAGAGCGGCGGGTGCGGGGGGCGAGGAGGCCGAGGAGTCCCTGGGGAACGGAGCCGGCCCGTCTGAGGCTGCGGAGGTCGTCTCCACCGACAGCAGTCTGGCGGGAAGCGATGATGAGTCATAG

Transcript

SKAU_T00265090

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01825	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000203	Conserved_site	GPS motif	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR001759	Family	Pentraxin-related	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR017983	Conserved_site	GPCR, family 2, secretin-like, conserved site	Interproscan
IPR034392	Domain	TatSF1-like, RNA recognition motif 1	Interproscan
IPR034393	Family	TatSF1-like	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR046338	Homologous_superfamily	GAIN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15608	SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005684	Cellular Component	U2-type spliceosomal complex	Interproscan
GO:0005686	Cellular Component	U2 snRNP	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-