Gene detail

Detailed information of SKAU_T00264290 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00264290	SPERMINE SYNTHASE	CM056385.1	12874870	12902697	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00264290

GACCCCTCtagttcctatatacgctctatggtcccAGCTACCCAACCGCTCCCACCAAAgattgctccgcctaccctctttgctcTCACCCCCTCCCTCTGCCAGGCGACCGCACTCTGAGTCCTGGTATATTTCCGCAGGTTATAGCGGCTTCACACGGGTAACGTTATTGTACACCAGGCATGGCTGACGGCTGCACCTCATCATGGCCGTACGACATTATACTCTCGACATCAGCCTTTCTGCGCCTGCTGACTCTTCCACGACTGTGCGTGGATTGCAGACAATTTTTCAGGAGCAAGAAATGACAGAAACCATTCACAACACAGAAGGCCATGGCTACTTGGCAACCTTCATTGGCAAGAATGGCAGGTTTGTTGTTCTACGGATCCACAAGCATGGGCTGGTGACACTTGACCTGCAGTGCTATGAAGCAGACAACCTCATGCAAGTAGACCATCTGTTGAATGCGCTGGAAAAGAAGCTGAAAACTGTTCTACACAGGAATATCAGGAGGATTAAAAGGCTCCCAGCACTGCAGCGCGGGGCCAAGGTGGACCGGTACTGGCCCACAGCCGATGGCAGACTGGTGGAGTACGATATCGATAAGGTTGTGTATGAGGAGGACTCTGCCTATCAGAACATTAAGATCCTGCATTCCGGTCAGTTTGGGAACATCCTCATCCTCAATGGAGATGTCAACCTAGCAGAGAGCGACCTGGCCTACACACAGGCCATCATGGGCAGTGGGAAAGAGCAGTATGCAGGGAAGGAGGTGCTGATCCTTGGGGGCGGTGATGGGGGCATCCTCTTTGAGGCCGTCAAGCTGAAGCCAAAGATGATCACCATGGTGGAGATTGACCAGCTGGTGATTGATGGATGTCAAAAGCACATGAGGAAGACTTGTGGAAATGTCCTGGACAATCTGAAGGGAGACTGCTATGAGGTGTTAGTAGAGGACTGCGTCCCCGTGCTGAAGAAGTTTGCTGAAGAGGGGAAGACATTTGATTACGTCATCAATGACCTCACTGCAGTCCCCATCTCCACAGCACCAGAGGAAGATTCCACCTGGGAATTCCTTCGTCTGATTCTGGACCTGTCAATCAAAGTTTTGCGACCGAGTGGGAAATACTTTACGCAGGGAAACTGTGCAAACCTGACCGAGGCATTGAGTCAGTACGAGGAACAGCTGGAGAAACTCAGCTCTCCTGTAGATTTCTCCAAGGAGGTTGTGTGTGTTCCATCGTACATGGAGTTGTGGGTTTTCTATACAATCTGGAAGAAGTAAAAATCCTCCGTCTCTCAAACCCCAGCTCCTACCTGTACATGGCAGTTAATACGAGTATAGCTGATTTTCCACAGCACTGAAGAGAAATACCGCTGTTTTTACTATCCCTTTTGTGTTGAACCTGCAgactttttttaacatttactGTTATTACTTTGTGttgaaagtaaaaaagaaaaaaaaaagaatgtatttTGTTTGTGAGTTTGGTTTGAGCAATGTTTTTGAGTGCCTCTGGGGGGCGCTGGCTGGCAGCATGGAGTGAAAGCTGCTTGATACACTGATGGAGAGTGACTCAGCATTTTGCACAGAGCAGGCTCAGCCAAACTCCTGCTTCTGTGAGTTTCCTTATAGTTCACTTTTTAGATTAAAGCACCCATAGAACCATTTTTGATTACCTTtccattttaatatatatattttttttttggtagtTTGATTTGTTCTTTTTATTCTGTAACTTTCTTCTGTACCTTTGGCTTGAATGTGATTTGATTCATGGTGCTTCCTGAGGATGATCAGCAGTGGTGACGCATTCTGGGATTTCCAGGGATTCAGGACCTGCACTGACCCCGCCCACTGCAGTTGATGTGCTATATGTGGTTTAAAAGGGAAATGGGTCCTTTTGCCTTTAGTTTTGTGCTTGTTTTCTTTTTGCTGAACTGTGAAGACTTTTATATAATCAGGCTCCTCCCTAGTGTTCCCTGCTGGTTTTTGTCCTTCACTTTTTTCTCCTTTGAGCTCAGTGCATTTCTGTGAAATTGTTTGATGCACATGCTGGAAGTTTTACTGTATGtagcatgcacatacatacacatttaTGCATATTTTCCATAATGAGGTGATTTGTTAaagtttatttattaaattttacc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01564	Spermine_synth	Spermine/spermidine synthase domain	Domain	Interproscan
PF17284	Spermine_synt_N	Spermidine synthase tetramerisation domain	Domain	Interproscan
PF17950	SpmSyn_N	S-adenosylmethionine decarboxylase N -terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015576	Family	Spermine synthase, animal	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR030373	Conserved_site	Polyamine biosynthesis domain, conserved site	Interproscan
IPR030374	Domain	Polyamine biosynthesis domain	Interproscan
IPR035246	Domain	Spermidine synthase, tetramerisation domain	Interproscan
IPR037163	Homologous_superfamily	Spermidine synthase, tetramerisation domain superfamily	Interproscan
IPR040900	Domain	Spermine synthase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46315	SPERMINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006597	Biological Process	spermine biosynthetic process	Interproscan
GO:0016768	Molecular Function	spermine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-