Detailed information of SKAU_T00256700 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00256700CYSTATHIONINE BETA-SYNTHASECM056384.15531414355341996+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors Familyzf-CCCH

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00291PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan
PF00571CBSCBS domainDomainInterproscan
PF00642zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR000644DomainCBS domainInterproscan
IPR001216Binding_siteCysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment siteInterproscan
IPR001926DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR005857FamilyCystathionine beta-synthaseInterproscan
IPR009145FamilyU2 auxiliary factor small subunitInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR036052Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR046342Homologous_superfamilyCBS domain superfamilyInterproscan
IPR046353DomainCystathionine beta-synthase, C-terminal domainInterproscan
IPR050214FamilyCysteine Synthase/Cystathionine Beta-SynthaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10314CYSTATHIONINE BETA-SYNTHASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004122Molecular Functioncystathionine beta-synthase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006535Biological Processcysteine biosynthetic process from serineInterproscan
GO:0019343Biological Processcysteine biosynthetic process via cystathionineInterproscan
GO:0019344Biological Processcysteine biosynthetic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0089701Cellular ComponentU2AF complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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