Gene detail

Detailed information of SKAU_T00253040 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00253040	AGAP004733-PA	CM056384.1	43527006	43535184	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00253040

ATGGCCGGCGATTGCGCCTACGAAACGCACTATGTTAACGATGACACGTTTGGCAGCAAGCAATTGTTCGGCAGAAATCAGGAACTCGTAGTAGATTCTGGTGTGCGAGACACCGCGAAGGGTAGCAAGTCGATTAAGGCGGTTGTCTCGTCACCCTACTTTGAAATAGTAGACGGAGTTTTGTACAGAAAAAAGTTGGAAAAAGGATACGTCAGCTACAGGGAGGTGTTGGACGGGAATCGACAACTCGGCGCGATAGCCGCTTTCCACCAAGAGCCACCAGGGAAGCGACACCGCACCTTGGATGACACCTATAGAACTGTGGCAGATAACTACTGGTGGGAAGGGATGTACTTCCACATCCGAGAGTATGTTTTGGGCTGTCCGCAGTGCCAGGCCCAGCAGAGAAGAAAAGAGGACCCCGTTGAATCACGCGTTTCCAGGACGCTCGCGTCCCATGGCAACGCTGTGCTCCACAAGCTGAGCAGCCAGCGGGAGGCGGGGCTCTTCTGTGACATCACTCTTAAGACGGGCAGCCGCTCCTTCCCCGCCCACCGTGCAGTTTTAGCGGCCGTCAGCGAGTATTTCCAGGAGATCTTCGCCGAGATGGACTCTGATGGACAGCCCACCGTAGACCTCACTGGGTTCAGGGAGGAGAGTGTCCTGCCCCTGTTGGAGTTCTCCTACACCTCCACCCTGTCCCTGAGCGTGGGGGACCTGGCGGAGGTCTCTGCCCTGGCCCAGCACTTCCGCATGTGGCCCGCCGTGGAGGCCTGCAGAGCCATGCAGAGTGAGCGGGACGGGGACGCGCCCAAACCCGGCGCGGGAGCCTTCCACGAGCGCCCGTGTCCCGTGGTTACGAGCAGAGCACAGGTCTTGCACCAGAAGAGGAAACGTGGGTGGAGTTTGGGGGAGCGAGATTCTGTTCAGAGCGGGGAGGCCTACACGCTCACCTTCGATCCGGCCAGTGTCGCTCCGAGCTGGCGAGGCAGGGAGAGCCACACCCCCAGCAGCCCTGTCCgaaggctgaagctgatggattTTAAGTCCCCGTCCAGCAAGGTGAAAACGCCCCCCCAAAACCCTCCCCCTGGTACGCCTGTGCTCCAGATGCACACGATGGCCCAGCAGAGCCCCCTGTCCCCCTGCTCCAAGAGGTACAGGCAGAGGCTGAGCTGGGCGGAGTTGGGGGCGGGGCCAGCGGGGGCAGAGCAGGGTGAGGAGGAGGGGCAGGGCTCCAGGGCGCAAGAGAAGTACAGGCTGCTGAGCATGCTGGGTCTGCAGAGGCGGGGCCTGCTGCCCCGCCCCGAGGAGCCCACTGGCTGGAGGCAGAAGAGGCGTCTGCGCAAGCTGAAGGTGAGCAGCTACGCGCTAACTCGCCCGCGGAAACCGCGAGCCCCGCCCCACGGCGACGCCACTGGCCTGCCCCTCTGCAATCGACCGGCCCCACCCAGTCCCGCTCTCCTCCAGCCGCTGATAAAGACTGAGCCCCCCGAGCCAGTCAGCGTGGAGGATATGAGGTTGGGCAGGGGGCGTGGGCGGCGCACGCCCGGCTGGATTCCGGAGCGTACGCAGCTGAGGCGTTCGGTCCGGAGAGCAGTCGCCCCTCCGCGGAACCCCGCCCCCGAGGTGCCCCTTCCGGCTGGCAGGAAGTCTGCGCGTGTGAAGCGGGAGCCTGACGCCCCCCCGATCTGTCCCCAGCCCCCCTCTACGCCCAGCGCCCACGCCCGTCCGCGGGGGCGCCCTCGCAAGCATCCGCCCCGCAGAGCCAGCGCCCTGGCGGTACAGACTGCAGCGCAGCAGAGCGGTGTGAGGCCGAGGGGCCGTCCGAAAAGCGCGGCGGACCCCTCGCGCGCACACCCCCTCGCCCGCAGCCTGCTCAGGACCGTCAAAGAGGAGCCGGCCGACGCCCTGCCGGTGACTTCGGCCCAGCCCACCCCCGTCCCTGCTGGGCGTCGCCGACGCCAGAGCAAGCCGCCGCTCAGGCTTCTGGACCCCGGCTTCCTGTTCCCCCTGAGCAGGCCTGTGGCGGCCGTGAAGAAGGAGGAGGTGGGTGGGGACGTCTGGCTGGCGCGCTCCGGGCCCTACGGTACCGGGAGCGGCTCAGGAATCGCCAGGACCCGCCATTCCCTCCGCCGCGCGTGTGCCGGGCTTGGGTCCGACAGGAAGCAGCTCCATGCTCAAGGGCCCTCGGCACCGCTGCTGAACAAGAGGAGGGTGCGGCGCAGGCTGTTGGATAGAGGGGCCACGGGGGCCCTTCCCAGACCTGCCCTCAGGGCCAACAAGGCAAAGCAAACGGCAGAACTACCAAAGAATCTGCACTCGGTGTCATCGTTGCAGCATCAGCGATCGGCAGCCCTGGAGTCCGTCCGCAAGGCGCGCATTAAACGGCTGAGGGAACGGAGAATCCACACCCCTGTGACATCACACACCTGCCTCCAGTGCAAGACTGCGTACTGGAACTGTGACACTCTGATCATGCATCGCATTCGCCACATTGAGGGGAAACACTGGCCCTGCCCTctgtgcAGTAAGACGTTTTTCCGCCAGCGGAACGTTCAGAGTCACATCCGCACACACGACCCAAAGCTCTACAAGTGCTCCAGCTGCATCTTGGCACCCTGA

Transcript

SKAU_T00253040

ATTGACTGAAGAGGGGAGTTGTGGATGTTAAATTAAGTTAGGTTGTCATGTGGTAACCAGGGGAAGGCtacgagttaaaaaaaaaaaaaaaagataatataaCATATGACTGAGAAGAAGGAGAAAATAGACAACTGGGTGCTGATAAGATTGATGTCGTTGAAGTTATTGTGTCCGTATTTGTTTTTGGCACATTCGGGGAAGCTGTCTCGTGGTTTGCGCTCTCCAACTCAATGTCCGTTTGCTAACCGGCTACATCATGTAGCGAATCTACAGAAATCAAAGTTAGAGGAGAGATAACTATCTAGCGAGTTCGTTAATAATTAATTCCTATGCGTAAACTGATGTATAGAAACAATTATCCGTGGATTGCTGGTGTAATGCATTGTTTCGACTCGTGTAGAGTCGCTAGCAGAACTAGTTGCTCGATCTTGTTTAGTAGGCTAACGTAATGGACCGGTATGATAGACAACTGCGTCCTGGTTGGAATGGTCATTTGCATCTTGGTTTTGTGAATTAGCTAACCAATTTAGCCAGCTATCTTGAAACGTAATAATAATCTCAACACAAACACCTCATTCAGTTATCTCGAAGTAGTTGGGCTACATTTGAAATAGTTATTCCATTGTATTCCGTCTTCAGTATAATCCAAATAACTAGCCTTGTTCTAGTTTCTAGCTCGCTGTAACTTCTTTAAAGACATCAGGCCTATCTGTTTGATTATAAGACAATGTTTTAAAGTAGCCTACTCGGGGTTTACATTTGTTCGAAGAGGGGTTGTTTGTGATGCGTTTGGCTCATTAACACGGTAATGTTTGCCTGAATTGCCCGGGAATTTAGATTTGATAGAATATATGACCATTTAATTATCATGTTATGCACATTTAATTCTAGTTGTTGCTTGTTATTTTATTGCACATTTACTTGGTAATTTTTTAACACCACTGGATCTGTATAAAATTTAGTTTTTATCAGGATAGCGAGTTTCTCCGGGTTTCCTGCTGCGGAATGCACGTACTTCGGTTGCACAAAGTCTCGTATAAGATTAGTGTCAATAGGCAACATTTTAAAGTTTTGAGAATTGGGGCAGAAGCTGAATCTTGTTCGGGACCACTGTCGGACTAAATTAGGTTACAAACAGGTTAAAGTGCTGCGTTGGGTGGAACTGGTGCACGTCTCTTTAACACGGTTACTGGCCAGGAAGACGGAAGGAAAAACAAATCGGGAAAACATCTGTAAACAGGAAAACCAAAGAAAATGGCCGGCGATTGCGCCTACGAAACGCACTATGTTAACGATGACACGTTTGGCAGCAAGCAATTGTTCGGCAGAAATCAGGAACTCGTAGTAGATTCTGGTGTGCGAGACACCGCGAAGGGTAGCAAGTCGATTAAGGCGGTTGTCTCGTCACCCTACTTTGAAATAGTAGACGGAGTTTTGTACAGAAAAAAGTTGGAAAAAGGATACGTCAGCTACAGGGAGGTGTTGGACGGGAATCGACAACTCGGCGCGATAGCCGCTTTCCACCAAGAGCCACCAGGGAAGCGACACCGCACCTTGGATGACACCTATAGAACTGTGGCAGATAACTACTGGTGGGAAGGGATGTACTTCCACATCCGAGAGTATGTTTTGGGCTGTCCGCAGTGCCAGGCCCAGCAGAGAAGAAAAGAGGACCCCGTTGAATCACGCGTTTCCAGGACGCTCGCGTCCCATGGCAACGCTGTGCTCCACAAGCTGAGCAGCCAGCGGGAGGCGGGGCTCTTCTGTGACATCACTCTTAAGACGGGCAGCCGCTCCTTCCCCGCCCACCGTGCAGTTTTAGCGGCCGTCAGCGAGTATTTCCAGGAGATCTTCGCCGAGATGGACTCTGATGGACAGCCCACCGTAGACCTCACTGGGTTCAGGGAGGAGAGTGTCCTGCCCCTGTTGGAGTTCTCCTACACCTCCACCCTGTCCCTGAGCGTGGGGGACCTGGCGGAGGTCTCTGCCCTGGCCCAGCACTTCCGCATGTGGCCCGCCGTGGAGGCCTGCAGAGCCATGCAGAGTGAGCGGGACGGGGACGCGCCCAAACCCGGCGCGGGAGCCTTCCACGAGCGCCCGTGTCCCGTGGTTACGAGCAGAGCACAGGTCTTGCACCAGAAGAGGAAACGTGGGTGGAGTTTGGGGGAGCGAGATTCTGTTCAGAGCGGGGAGGCCTACACGCTCACCTTCGATCCGGCCAGTGTCGCTCCGAGCTGGCGAGGCAGGGAGAGCCACACCCCCAGCAGCCCTGTCCgaaggctgaagctgatggattTTAAGTCCCCGTCCAGCAAGGTGAAAACGCCCCCCCAAAACCCTCCCCCTGGTACGCCTGTGCTCCAGATGCACACGATGGCCCAGCAGAGCCCCCTGTCCCCCTGCTCCAAGAGGTACAGGCAGAGGCTGAGCTGGGCGGAGTTGGGGGCGGGGCCAGCGGGGGCAGAGCAGGGTGAGGAGGAGGGGCAGGGCTCCAGGGCGCAAGAGAAGTACAGGCTGCTGAGCATGCTGGGTCTGCAGAGGCGGGGCCTGCTGCCCCGCCCCGAGGAGCCCACTGGCTGGAGGCAGAAGAGGCGTCTGCGCAAGCTGAAGGTGAGCAGCTACGCGCTAACTCGCCCGCGGAAACCGCGAGCCCCGCCCCACGGCGACGCCACTGGCCTGCCCCTCTGCAATCGACCGGCCCCACCCAGTCCCGCTCTCCTCCAGCCGCTGATAAAGACTGAGCCCCCCGAGCCAGTCAGCGTGGAGGATATGAGGTTGGGCAGGGGGCGTGGGCGGCGCACGCCCGGCTGGATTCCGGAGCGTACGCAGCTGAGGCGTTCGGTCCGGAGAGCAGTCGCCCCTCCGCGGAACCCCGCCCCCGAGGTGCCCCTTCCGGCTGGCAGGAAGTCTGCGCGTGTGAAGCGGGAGCCTGACGCCCCCCCGATCTGTCCCCAGCCCCCCTCTACGCCCAGCGCCCACGCCCGTCCGCGGGGGCGCCCTCGCAAGCATCCGCCCCGCAGAGCCAGCGCCCTGGCGGTACAGACTGCAGCGCAGCAGAGCGGTGTGAGGCCGAGGGGCCGTCCGAAAAGCGCGGCGGACCCCTCGCGCGCACACCCCCTCGCCCGCAGCCTGCTCAGGACCGTCAAAGAGGAGCCGGCCGACGCCCTGCCGGTGACTTCGGCCCAGCCCACCCCCGTCCCTGCTGGGCGTCGCCGACGCCAGAGCAAGCCGCCGCTCAGGCTTCTGGACCCCGGCTTCCTGTTCCCCCTGAGCAGGCCTGTGGCGGCCGTGAAGAAGGAGGAGGTGGGTGGGGACGTCTGGCTGGCGCGCTCCGGGCCCTACGGTACCGGGAGCGGCTCAGGAATCGCCAGGACCCGCCATTCCCTCCGCCGCGCGTGTGCCGGGCTTGGGTCCGACAGGAAGCAGCTCCATGCTCAAGGGCCCTCGGCACCGCTGCTGAACAAGAGGAGGGTGCGGCGCAGGCTGTTGGATAGAGGGGCCACGGGGGCCCTTCCCAGACCTGCCCTCAGGGCCAACAAGGCAAAGCAAACGGCAGAACTACCAAAGAATCTGCACTCGGTGTCATCGTTGCAGCATCAGCGATCGGCAGCCCTGGAGTCCGTCCGCAAGGCGCGCATTAAACGGCTGAGGGAACGGAGAATCCACACCCCTGTGACATCACACACCTGCCTCCAGTGCAAGACTGCGTACTGGAACTGTGACACTCTGATCATGCATCGCATTCGCCACATTGAGGGGAAACACTGGCCCTGCCCTctgtgcAGTAAGACGTTTTTCCGCCAGCGGAACGTTCAGAGTCACATCCGCACACACGACCCAAAGCTCTACAAGTGCTCCAGCTGCATCTTGGCACCCTGA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ZBTB
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651	BTB	BTB/POZ domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR017956	Conserved_site	AT hook, DNA-binding motif	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR050457	Family	Zinc finger and BTB domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46105	AGAP004733-PA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-