Detailed information of SKAU_T00243710 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00243710SPLICING FACTOR 3B, SUBUNIT 1-RELATEDCM056383.17198586072046678+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00023AnkAnkyrin repeatRepeatInterproscan
PF08920SF3b1Splicing factor 3B subunit 1DomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF13637Ank_4Ankyrin repeats (many copies)RepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002110RepeatAnkyrin repeatInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR015016DomainSplicing factor 3B subunit 1Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR038737FamilySplicing factor 3B subunit 1-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12097SPLICING FACTOR 3B, SUBUNIT 1-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000245Biological Processspliceosomal complex assemblyInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0005689Cellular ComponentU12-type spliceosomal complexInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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TOP