Gene detail

Detailed information of SKAU_T00230680 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00230680	CENTROMERE PROTEIN E	CM056383.1	15445885	15511576	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00230680

Transcript

SKAU_T00230680

ATGCTTCTATTTAAAAAAGTGGACCTGGGGAAATACATTGAGATGGCGGATGCATCCGAGTGCGGCGTAAAAGTAATGTGCCGTTTCAGGCCATTAAATGAATCAGAAATCACAAGAGGAGACCAATACATCCCTAAATTCAGGAATGATGACACGGTGGTCATAACGGGCAAGTCGTACGTCTTTGACAGAGTTCTGCCCCCCAACACAACCCAGGAGAATGTCTACAACACTTGCGCCAAACAGATTGTGAAAGATGTTCTTGGAGGATACAATGGAACCATCTTTGCCTACGGCCAAACCTCATCAGGGAAAACGCACACAATGGAGGGCAAGCTCCATGACCACCAGCTGATGGGGATCATCCCCCGAATCGCGAGTGACATCTTCGACCACATCTACTCCATGGACGAGAACCTGGAGTTCCACATCAAGGTCTCATACTTTGAAATCTACTTGGACAAAATAAGAGACTTACTAGATGtGTCAAAGACCAACCTTGCTGTACACGAAGACAAGAACAGAGTTCCCTATGTCAAGGGCTGTACGGAGCGATTTGTGTCCAGTCCTGAGGAGGTGATGGATGTCATCGACGAGGGGAAAGCCAACCGCCATGTCGCCGTCACCAATATGAATGAGCACAGCTCCAGGAGCCACAGCATCTTCCTGATCAGCATTAAGCAGGAGAACGTGGAGACGGAGAAGAAACTGACGGGGAAGCTGTACCTGGTGGACCTGGCTGGGAGTGAGAAGGTCAGCAAAACTGGAGCTGAAGGGGCCGTGTTGGACGAGGCCAAGAACATCAATAAGTCCCTCTCCGCTCTGGGAAACGTCATCTCAGCGCTGGCTGAGGGGACTAAGAGTCACGTCCCGTACCGGGACAGCAAGATGACCCGAATCCTCCAGGACTCCCTGGGGGGGAACTGTCGGACCACCATCGTCATCTGCTGCTCCCCGTCTGTCTTCAACGAGGCCGAGACTAAGTCCACGCTCATGTTCGGGCAGAGAGCCAAGACCATCAAGAACACGGTGTCTGTGAACCTGGAGCTGACTGCCGAGGAGTGGAAGAAGAAGTACGAGAAGGAGAAGGACAAGAATAAGAGTCTGAAGAGCGTCATCTTCAGGCTGGAGGCTGAGCTTAGCCGCTGGAggaaggGTGAGGCCGTGCCCGAGGAGGAGCAGCAGCTTAACGCCAAGGACAAGAAGAACACGCCCCTTATCGACAGCCTGGCCCCGCCCATGGTCCTGCTGTCTGCTGAGGAGAAGAGCAAATATGAGGAAGATATCAGTGAACTTTACAAACAGCTGGATGACAAGGATGATGAGATCAACCAGCAGAGCCAACTGGCCGAGCAGCTTAAACAGCAGATGGTGGACCAGGATGAGCTGTTGGCGTCGACACGGCGAGACTATGAGAAGATCCAGGAGGAGCTGGCTCGGCTGCAGATGGAGAATGAGGCGGCGAAGGAGGAGGTGAAGGAAGTGCTGcaggcgctggaggagctggccGTCAACTACGACCAGAAGAGCCAGGAGGTGGAGGATAAGACCCTCACCAACGAGCAGCTGGCAGAGGAGCTGGCACAGAAAACTacgACCCTTGTGACCGTGCAGAGGGAGCTGACCGTGATACAGGAGCTGAGTAATCACCAGAAGAAAAGGGCTGCAGAAATCCTCAATCTGCTGCTGAAGGATCTGACTGAGATCGGGGGAATCATCGGCACCAACGACAGCAAGGCGATGACCGAGTCGAACGGCGTGATTGAGGAGGAGTTCACGATGGCCCGGCTCTACATCAGTAAGATGAAGTCAGAGATAAAGTCCCTGTTCAATCGCAGCAAGCAGCTGGAGACGTCGCAAGCCGACACCAACCGCAAGATACAGGCCAATGAGAAGGAGCTGGCCTCCTGCCAACTGCTCGTCTCCCAGCACCAGGCCAAGATTAAGTCTCTGACGGACTACATGCAGAGTGTGGAGCTGAAGAAGAGACAGCTGGAGGAGAGCCATGATGCTGTGACTGAGGAACTGGCTAAACTAAATGCCCAGGAGAAAATGCATGAGGTGTCAGTGATGGACAAGGAGAAGGAACGCATGACGTTGCTCCAGGATGCTGAGGAAATTAAGAAGACCCTGGAGCAGCAGATGGAGAGCCACAGAGAGACACACCAGAAGCAGCTCTCCCGCCTGCGCGACGACATCGAAGAGAAGCACAGGGCGCTGGACGAgctgaaagaTCTGAACCAGGGTCTGCAGCTGGAGCAGAAGAAGCTGATCTCAGACCTGGACAAGCTGAAGGCTGAGGAGCAGGGGAAGGACGCGCAGCTGCAGAAGCTGATCCGGCTCAATGAGAAACGCGAGCAGGCCAAGGAGGACCTGAAGGGCCTGGAGGACACTGTGgccAAGGAACTGCAGACGCTGCACAATCTGCGCAGACTGTTTATTCAGGACCTCACCACTCGTGTGAAAAGGAGTGCCGAACTGGAATGCGATGACGAAGGAGGCAGTGTTGCACAGAAACAGAAGATTATCTTCCTGGAGAACAATCTGGAACAGCTTACAAAAGTCCACAAACAGcTGGTGCGTGATAACGCAGATCTTCGCTGTGAGCTGCCGAAGCTGGAGAAGAGGCTGCGCGCTACGGCCGAGCGTgtgaaggccctggagtttgCCCTGCGGGAGGCCAAGGAGAACACCATGCGCGACCGCAAGCGCTACCAGCAGGAGGTGGACCGCATCAAAGAGGCCGTGCGCACCAAGAACATGGCCAGGAGGGGGCACTCTGCCCAAATCGCTAAGCCCATCCGCCCAGGACATCACCCAGCATCCTCCGCTCCCACCATGGCAAATGCCATCCGAACCGGAGGGGGTTCCAGCCACCAAACCCATCGTCACCACAACAGCAACAGATGGAAGCTCAATGAATCACATGTACAGTTTATCTTTCTAGCGGCTGTACTATCTGGAATGTTTTGTCAAGAGATGCAAAAAGGAGCCAGGTTGAAACCACGAGAAGCAAATGGACAGAACTGGAATCGTTGTTCCGCACGTGGATGGGTCTTTAGACCCATACTGTTCAGTAAACGCTCGACCCCGCCCTTCCCCCAACCTCATGTCAGCTGTCGGGACGGAGCGCTAGCTGACTGTGGCACATCACCGCTCAGCGATGCCTCCAGTCTGACAGAGTGGGTCAAGAGTGAGATCGCTACCCCCTCTTCCTGTGTGGACTGGCAGGACAGATCACAGACAGGGAGTTTTGACCTCTGGAATCGGGACACTGCAGGTCAGTCTGTGAACCTGTCCAGATCCACAGCAGTGACGGGGCCTGCAGGCTTCCCACCGGTAAACAGAAGGAGTAAAGGTCTGGTGACAGGCCTTCATCCTGCAGTGATGGCGTTTTCCGTTATCCCGCCTCACGCCACGGTTCTGCAGGTCCTCTTGGTCGTAGCCATGTGTGACGAGAGAAACGCCAATCACATCAACTTCTACAACATCGTACCACCCGCAGACGTGACCCCTTTCCCCAAAAGCTTCAAGTGCTTCACTTGTGAGCGCGCCTCAGACAACTACAGCTGCAACCGCTGGGCGGAGGACAAATGGTGTCCAGAGAATACGCAGTTCTGCATGACTGTGCATCACTTCACCAGCCACGGCAAGACCAAGTCTGTGACCAAGAGGTGTGTGAGCAGAGAGGACTGCTACTCTGTGGGCTGCCAGCACCACAGAGATGCTGGGCATACAGAGTGCATATCTTGCTGCGAAGGCATGGCCTGCAACGTGGAGGTCCCGACCAATCACAGCACCGCAGTGTTCGCCATGAGACATGCCCCCAGCTCCTCGGCGCCGTCCCATGGGATTTGGAGGGTTCCGTTGCTACTCGCTACGGTGTTCACGGTGCTGGTCCTGTTGTGATGGCAAAGTGCATCCGAAACTGGACCTGTAGAGTCCCCTCGGACTGACTGTGGAGCTAGCAAACTGATCTGTGGACTTGTGGAAGAGCAGAGGTCGGCGTGGAAGCTGTCGAATGTCCAGGTCTGAAGCCTCATTAATGACAGTACATCCAATGGAGACAAACTGAgactttttttccaaacaaaatcgctTTTTGGACAGGGGGTTTCAGCACACACATTTGTCTGACCTCAGGGTGTTCATAAAGCAAGCATTGTTAATCTGTTTGTAGCTCAAGGACGTGCTGTGTTTGAAGCAATTGGACCTCAGTCCATTTGATTGATCCCTCCCATAACATGTGACCCTGCACATCATTACTCACACACAGGGTCTGACGGGAGTATTCAGGAGCCAGGCCAGATTGGGCTGGACAGAGTTAAAGGTTAACACTGTTGGAAAGCTTGCCGTACGTCAGTCGGTTAGCCTTTTGATTCCATAGTCAAACAGTGGCCACCACAGAGATTATTGCACCTTTTGTTGACTTGATACAGGTCTTTGACTGTGCTACTGCAATGGAGATAGGACTCATGGAGACATATCTGTTCCACCTGAGAATGCAAATCAAATGTGAATATACAGTACTGAATAAATGGTCATTAATATCTGTAGCATACTCTTTCTAATATTCCATGAAAGTGATTGCGTCACTGTAATCGCTGGAGATGCACAAACCGTAACTTCAGTATGATTACCtacatgtgtacatgtgcatgtgtacTCTCTTAAACGACTGATAAATTTTTATTTGTGTATTAAAAATCCAATATTTACTTGTTACTATTACTGTATacctactagctagctagttaggttaACAATGTTCTTTTTTAGCCAAGTAGCCTACTAACGTTATACACAATTAGCCCAGGAGGCAGTCGATAAAAACGGGCAAATGTTAACGTTAGGTGAAACCTGAAATGAAAAGTATTAACTTTGCCTGTGCTGTGTGATAGTTTACCACACATTATTAGTTCAGCCTCATCCATAAAAAGTGATGAGATGTCATATGAATTAATAGGAATTGTTACAGGCTTTGCTTTGTGCATTACTACGGTGATGTATAAACACAGAACCTTGGCGTTAAGTGTAGAACAGTGGCGTGTACTTCGTATTGAATACACAGCAGGAATACATTATCTTCAAAGCAGACAATGCGTAATGTGGGGATGTACGTTTTACCTTCCTCTGTCCTTTAGAAAAAGCTTGACATTTAGACTGTCTTTATCCTATTAAGCTTATACTAGCCTACTTGATGAACTCATTAGAATTTTATGAATTGGATCGTTTTGCTGGTCGTTTGggtaattgaaaacagcacaactTAGATGATGATTTTCCATCATAAACATAGGCCATTTACTCTATATGggtatttaccataagcctttaaGTATAATTACTTGCAACAACATTGCATGTAGTCATTAAGCTTCTTAGACTGGGAGCTCATTGTGCAGCAGAGTTAAAAAACTAAATATTACTTCTAACTTAATATATCTTATGATAAGGTTTACTCTAAGTAGCCAGTCTTTCCAGATGACCAACTAGCTTCATACAGATTGGTGAAAAATGTTCACGTGTTTTCTTAAGAACAGTCCAATATTTATTTCAGATAGATATTACCTCTATGTTTTACTCTAAAATCATCTTAGGTACATATTTTTAAATGCCATTTCAATAAATGACTTAATTCGTATTCATTAAGTGGACATTTCATGTGGTTGGATATAATCTTATTTcccataatttattatttaagtttattttgGAATTCACTTATTTTACCAGACCTAACTTGTAGGCTGCATATAAACTGTTCATTTTAAAGAATTTTAGATTTTTGATAATTTGACTGTATTAAACAAAACAAAGGAGTTATATTAGTGAAttcaaaagtttttttatttatgaatCAAACAGTCCAGTTTACTAGAGTTTAACATTAAACTTACTAATAAAAGAATAGTGAGTGGTTGAGAGTTTCCCTGTGTGTGCTGTTTAAATTGTGTCTTTCAATCTATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225	Kinesin	Kinesin motor domain	Domain	Interproscan
PF16975	UPAR_LY6_2	Ly6/PLAUR domain-containing protein 6, Lypd6	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752	Domain	Kinesin motor domain	Interproscan
IPR016054	Domain	Ly-6 antigen/uPA receptor-like	Interproscan
IPR019821	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027640	Family	Kinesin-like protein	Interproscan
IPR036961	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR045860	Homologous_superfamily	Snake toxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47968	CENTROMERE PROTEIN E	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0003777	Molecular Function	microtubule motor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-