Gene detail

Detailed information of SKAU_T00230350 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00230350	S100 CALCIUM-BINDING PROTEIN	CM056383.1	13301216	13304616	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00230350

ATGGTGCCCAGATGCCTTCCCCCCCCCAAACACCCAGTGTATAAAAGCCACCTCTTTTTCTCATTGACATTACACTCTTTGTCCCACAAAATAACTTCCTCCACTCTCCTCCATTGCAGCACCACTGCGACTGAACATCAGGTAAAAATGTCGGACTTGGAAAATTCTATCGCCACCATCATTGAAGTTTTCCACAAGTACTCAGAGAAAGAAGGAGACAAGCATAAACTGAAGAAGAGCGAACTAAGAGATCTGATTAACAGCGAGCTATCATCCTTTTTGGGGCACATTAAAGACCAGGCCACGGTGGACAGTTTGATGGAGAGCTTGGATGCCGACGGAGACTCAGAATGCGACTTCCAGGAATTCATGACTTTCATCACCATGGTTACCATCTGTTGCCATGAGTTCTGTGAGCACCATGAGGACGAGTAGGTTTGAGGGGGCGGGGGCTTAGTTTAACAAGATAAAAGTAATGTaaaccttttaacacacattTGTTTACACTTGTTAGACTCTGTAGCGATTCGGATGTGCCTTATCTGGTTGTGTTGCATCACTgtgtctttattttattatttcatgtTCAGTGCATGTTGTTCAGTGGAAGCTGGAATCCCTTCCCACAATCCCTTGCATGCAGAGGGTACTAATGCTTCCATTGTGTCACTAGATAGTGCATCTCCGATGTACAGTCCTGAAAAGATATAAGTAACAACACATGCCTTTGGTTTGCACATCTGTCTGTATGTCATTTACAATTTCAGTTAACAATATGAGGCAAagaaataaagaatacattttataCATCACATATATAGTCATAGTTACAATACAAGGGGGTTGGGTTTTCATTGGAAATATAAGCAAttttacatttcaaaataaacaaatacatttcaTGAACATAATTAGTAATGTTTGTCACAAATTGGCTACCAAAGGAAACACAAGACACCACCAGAAATATAGACACTGCTGTATCATCTCCttatgaaaatgaaaatcaaTGTGTGTTTCTGAACAATAACTTGTCAATCAACCAATCACTGAAGTCTTTATTGTTGTATAACACCCTTTACAAACAGGTTGCCAAACTGAATTTCACAATGGACAATGCACACTTTGATCAAAATCTACAATCATAATTTATATACATAAATTGGATTCCCCACACAGCCAGTCAACTGTGGACCAAAACGAGAAATACAAGGCCTCCACACAATGTAGGCAGTGCAAGTGTCAACACACAGCAAGAAAGACAAAGCATCCATCAAATCTGTATGAGTTCTGCTAACCTCTCTGCATGCAGAGATGCAGAACACAATACCAAGATAAGGCTATCTCTCTGTTGTATTTAATCTCTCAGCAGGCTTGTGAGCAAAGATGGTTGCTATTAAAAATATGCAATTTCACCtctttgattttgactttgagtCTTAGGATGCCCTTGAATGAAATGATGAGTTCATAtatatgtttttgtattttttttgctgGGCATACTTTACACAAAGTGCCCTGTCAAAATGACTTCATAAAGCATGCGTTATGCCTTCTATATCCCGCGgagacccggcagaaaaaagGTTTAAGTACTTTAATCTTTttcacataatacaagtgtcttgggtgacaaaaaaacaaatatttccaaaaatattatttcatttttattgaatttgTAGTGTAGGCTTCTgcatagtagaatacatggttcaTGAGATTAAGGCCAGAGACTCATATCCCCTACAGGATGAATTGCCGGATCTTATGAGGTTATGTAATatgtaataacatttttttttttttttaaacattcttaGCAAATGCAATGACTTACGATGTAGAACCTAACATATGCCACTTGACCTACGTTCAGCACTGCAACACCATCAGTCCAAAACTGCAAACATGGTTAGGAATGTTTTATGAGAGTGTTTGTGTAATATTATACTTTATGATAATTAAGGTTTCATGAAGGCTTTTGCAATATAGATTTCACATAGTGTCATCACAATGGCACTTTAAAAATCAACATGTTAAAAATGTTCATATCAAAATGCAATGGACGTGAGGTTTGACTATTTTTAACCCATGGTTCACTATTCACTGTTCTTATACAGAAGGTTATAAGACCTGGAACCCTTATGTTCAGCatccaaaacaaaaaataaaataaataaataataataa

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01023	S_100	S-100/ICaBP type calcium binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001751	Conserved_site	S100/Calcium binding protein 7/8-like, conserved site	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013787	Domain	S100/CaBP-9k-type, calcium binding, subdomain	Interproscan
IPR028481	Family	Protein S100-B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11639	S100 CALCIUM-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0044548	Molecular Function	S100 protein binding	Interproscan
GO:0048306	Molecular Function	calcium-dependent protein binding	Interproscan
GO:0050786	Molecular Function	RAGE receptor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-