Gene detail

Detailed information of SKAU_T00229690 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00229690	UNCONVENTIONAL MYOSIN-XVI	CM056383.1	10579584	10604581	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00229690

ATGAGGAAGGTCCCTCCCCCCAAGCCAAAAAGAAGCCCCAACACCAAACTGACGGGGTCGTACGAGGAGATTTCTGCTCATCGCTCCGCCGAAATGAAGCTCTCCTGTCTCTCCAAGGGGGGCCACTGTCTGGGGGTGATCCATAGGGCGGCGTCGATGGACGGACCCCACTGCGTGGGCCTCAGCCTCTATCGTCCCCTGGAGGAAGACGATGTCTACATCGAGATGGTGGGCCAACCGAGGACCGCCAGCCTCCCCGAAGTGGATAGCCCTGAGCTTAGCGAGGCCGTCTACGAGGAGATGAAGTACTTCCCGCCTGAGGAGGTAACCTTGACGATGAGCAATCCCGAGGAGCCGTCTCCCTCGTTGGTCCAGATGGCGCTGGCGGAGCAGCTCCACCCTCCTGGCCCTGGACCCAAGCCCCCCTGCAAGGACGGGACCTGTGACATCCCGCCCCCCTTCCCGAACCTGCTTCCCCACCGGCCGCCCCTGCTGGtgttccccccctcccccgccacaTGCTCCCCAGCCTCGGACGAGTCCCCCCTCACCCCactggaggtgaagaagctcccCGTCCTGGAGACCAACCTCAACTATCCGGGGCAGGGCGAGGGAGGCAGCCCACTCTCGCCCCAATATGCCCGCCAGAGGGCCGACTCCTCCCCCAGCCTGTCCGTCTTCATGCCCGACAAGCCCGCCCCCTCCCTCACGACCCCGCCCCCCACGCCCCctgtcctcccccctcccccagccctgccccCTCCTTACAGACCACCCTCCCACTTCCCATTCCCCCCCGAGGGCGCTGGGGTCATGGGGCTGACGCGCGCGGCGTCGGTGGCCACCCCAGACTCCTCCAAGGCGTCCCACAAGGGCCACAATTCGGCTGAGGCCCCGCCGGGCACCGGCAAGCCCCCCTACTCTCCAGCGAAGACAGGTCGCCCAGAGCCCCGCCGTGCgcactcctgctcctcctccccgcTGCTATTTAACCCCGCTTCCGTCCGCCCCCTCACCAGCCCACTGGACGAGCTCACCACCCTCTTCAGCTCTGGGAGGAGCCTGCTCAGAAAGTCCTCCGCAGGGAGGAAGATTCGAGAGCCAGGGTTCAACTCCAACATCAACGCCCCGGGCCGGGAGGAGGCGGGCACGACCCCGCCATCGCCATCGCTGCAGCTCCAGGACAAGAACGCTAACAACCACACCGCCCCCCACGCCCACTCCCACACCCACTCCCCCAGCCCCGCACCTTTGGAGAACGGCAATCAGCTGTCCAACGGCTCCCTGGAAGACGAGGGTCATTCCAAGTCAAACAGCTCCACGACGTCTTCCCTCCACAGGCACCTGGACGGTCATCACAGCCAGAGGAGTCACCTCAACTTCTCTCCCTTTGGCGCTGGAGCCGCCCTCTaaggtggggtggtgggggggctgGGTGTGCCCCTAAGGTTTGGGGAAGGGGTGATCCAGCAGCTGAGGCTGTCGCGGAACGAGAGCGCCGCCCTACAGGAGCTCCTGGAGTGGCGCAGGAAGCTGTGTGAGGAGAGGAGCGACTGGCGGAACCTTCTCCGCAGGCCTGAGGGTGACCCTGTTGCTTCCCCTCCCCCACTCTGCAAGAGCAGCCCCGTCCTGGCAAAGAAGGCCCTGCCATGACGGGCCTGTCTCGCCGGGTCGCACCCTTCCTCTggctctctcccttcctccccttTGACCCAGTGATCCCCACTCCCCTCCccatccacctctctctctcctcccagaGTGGTCAGAGAACGTGTAGTGACAGTGGGTGTCTCTTTGGGTCTCTGTTGGCCCTCATTGAAACAGATGGGAACATgttcctccatctctctctcactgttcTTCCCTGTTTCCCCGCGGTGTTAGTCTGGACCGAGTTGGGGATTAGTCACTCTTAGGTACTTTAGTGAGTCTCTGACGCCCCACGGTTTGAGAGCAGGGAAGGGAGCAGCTCTCTGAGCCACAGGTCTCCCCTCTGACTGTTTTTTCTTCCCTTTCTTGCATTGGGATGAGTCTCTCTCAGGTTCTGGGATGAGTCTCTGGAACCCCTGAGAGAGTAGACAGAGACCAGCAGAGAAGGGAATAGCTCTCTGAGCCACAGGCCTGACTGTTTTCCTTCCCTTTCTTGTGTTGGGATGAGTCAGGGATTAGTCTCTGGGACCGAGAGTAGATCTCTGAGCCACAGGCCTCCTCTCTGACTGTTTTCCTTCCCTTTCTTGTGTTGGGATGAGTCAGGGATTAGTCTCAGGTTCTGGGATGAGTCTCTGGGACCCCTGAGAGTAGACCAGCTCTCTGTGCCCCAGTTAATTCCTCAGACTGTTCTCCTCCCCCGTCCTTTTTTTAGGAAGAGTTGGCGATGAGCACAGGGTGAGTCTTTGTTAGGGTTAGGTTCTGGGATGAGTCCGTggaacacacatacactctctgaCCTCAGCTAAGGGAACTGAGGATCATGGAGACAGACTGTGCCTTCAACACTGGTGCACAGAGAGGAGTTACTCAGCTGAACACATTCTAAAGGCCTTCAGAGTGCGGGTCATCTATAGCTATTAAACAGTCCTATAGGCTAATATAGCGGACCCCTctgatctcccacacacacatttccccTTTTTTTCAGTGCTCACTGTAGTCTCTGTATGCCATGCTGTGAAACCCACATTCAGCTGGTGCTGGTCGTCTCGCGCCCGAGGCACGGACGGCGAATGCATCCGAAGTTTACAGGCAGACGGTCGCGTTTGCGCTCACATCGACCTCAGTGCTGTAAGCCTCGGGGAAAACCCTGCAGGAGCAGCCAATCCTCTAGGCCCTACAGGTGCTTCTCACGCCTCGAGACACGGGTGCAGGTTCAGGGAACTCAGGTGGAGCCTCAGGCACTCACCTGTCGAACCCCAGGCCGGAGTGTCCCCTGGTCCGGGGGCCACACTGTGTACGCTGGTTTGGCTCCGGCTGCTTCTTCTAGTACATTTGCTGTGATTGAGCTGTTCTGTGTACCCTGGTACGCTTGTCTGGTTTAAGTCCTCATAGAGAGAGATGTCAAAGGTTTGTTTGAGATAGCAGGATAATACAGGCCATATTTTTGTTCTTTATCTGATTATTTTAGGGATACCAGTGTCTGTTAAACTTAATTTGTTGTTCAATTCCATGTGAAAGGCCCAAAAACAGTTAATTGAACAGCAGGTTAAACTGAAGTTTGGTTTAATGGTCATGAATGTTGCCAGTTTGTCTATGGGAGAAAATTAGgggctttcttttttatttattatgccCTGTCACACATCTATCGCAGTGGACTGACAGCACTTTCCTGTCATGTGGTGTCAAATCCAAATCAATATTCAATTAACCACTCGGATGAAGAAGTCAGCTGATGCAAAAACCAGGTTCAGTACACAGCCCCGCCCCAACCCAGGTCAGGAAGCACCACCCTTGAGACCAGATTTAGCACAAAGTCAcatctgggctgcgtcccaatattcttcactcctctcctacccggaagcatgCAAAACTGTACGTTTCAAgaacaagtagttgcacgtacagtatacaatatacctgacattgcagttcgtgTCGAGGCATTACTTAATATGTAACAATATGTAATTagtatgaaatcagcaacattagattaggaaacAAATATCCGTGGTGGTAGTGCAagaggtggcagtggaggtaaggagggtgcatttttttgagtattgggacgcacccctgttcCACACTAGTGACCAGCACAGAGGCAAACACTCAGCTGTAAAACTTAAACCACCACCTTTTGCCGATAAACGAATGTGAGACTGTCAATGTGAATTTGAGACTCAAGTGACCACCTGTGACCAGGGCGTGTAAGAAAACATATGTTACAACTCTAACGTGAGAAAAATGTGTCAAACCTTAGTGAGCAGCTTTTGCACAAAGGCTGATGCCAGTTTATCAGGGTGCTCAATGCCTGTAAAATAAGTGGAAGAGATGAGGCCCCCTTAATTTGCACCCTATTTACTTATAGCAAGTCTGTAGAAGACTACCAGAGACTACTAAGAGGTAACCAGAGATTATTCTGCTTTAAAGTGCTGGATCATCCGATCAACTGCGCAATGCTGAATTTCACAACAGGAAAAGACCATTAATGCATGCATACatgcctgtacacacacacacactcaacgccGTGCCTCTGGAAACGTGTAGACAATTAACGCTCAAACATCTATGGTCTAGACATCCTACTAGAACAAAGATCTGCCATATTCCTGTGAACGACGACATTGTGTTTCTATCGAGATCAAGAAGAACGTTTCAGgaaacaactaaaaaaaaaagtgtgaaatcATTTCAGATTTCTGTACAAAAATAGTAGACAATTTCTGTACAGTTTCTGATTGAGAGGTGAGTGCACAGGTTCTCTCACCCTCCCCTAACCTAAGCACAAGCAACCACTGCGTTGTATGGTCAACCATCCCAAAACTGAGCCCAAATATCTCCAGCGGGTGATGGGTGAACATGCTGTAAATATAGTGTTCTAAGACCAGAAGGTACTggtaaaaaaaaagtacatacaAGTACAAACAGTTGTCCATCTGAACGAATATTGTTGAAAGTCTTGGTTCCTAGCAAAGAACAAAATTGTGTTTTGTCAGGTGAATAATTATTTTGTGTAGAATGATATAGTCAATTTATGTGTAGCCACTCCATACAGAATTCATCACTGCCCCCCTTCACCCCACAGTCAATATTTTTGTATAGAAATTATGTTGAATTATGTTCACGCACAACGCCTGTGTAAAATATCTTGTCCAATCATGGCTTGTGCATTTCTTGCCAACTGTCGTCTTGTTTTCTGGAACAGAGATGCACGACCTGTTTCGCAGTGGGAGGGGGCAGGCATAACTGACGAAACCCCACCCCTGTTTTGTGGAAATGCCCCTCAAACCGCAACCCTCACCTCCTTTGTATTAGGTGAAATTATCCAGGAGCTCCTCTCACTTCAGCATTAATGCTTATCTCTGAAGAATAGCCAGATTAGCATCGAGCGCTCTGAAGCACTGCCCTCTATTCGGAAGGCTGGATGGGGTGAGCGGCCTGCTCCACACTGGTCCAGAGTCCAGCTCTAGGACCACTCGACAACTCCTGTATTTTACACTGCGTTTCTCCCCCTTGtcgttttaaaatgtatttatttattgcgtTATtttatagaagaaaaaaaaacctaatgCACAAGTATAAatacatctctttttttttttataaaaaagccaCCAGATTCTACTGTTTTGTAAATGCATGAAAAATAAGCCTATGTACGCAAGCCTTCctctctgttttctttttttttgtattgctttttgttttcttgtttttctgtggatgaaaagtaatttacacacacactcctctgggTGCTAAAATGTCCCTGCCTCCATCCTGTCTGTGGCCCAGAACAGGCCAGTCTCCGAATGGACCACCTGGTTCTGCCATACCGGCCACAACAGACTTTTTATCAGGGAGATTTTCTCTGGAACAGTCCTCAGTGCACAACAGTGCAGAGTGGACCTCTTAACTGCACACCGACCATGCACATTGTTTGATATTACAACAAAAAAGGGGTTTTTGCTATTGTCTAACttctttctgttctttttttgtaaattcaaTATAACCTGTGGTTCTATTTCACTGTGTTTGTGGGGAAAGACAAAGAATGCCTCTTTACACATCTTGTTTTCAGTATTTTATAAATACCTGTACAGCAATAAAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15439	NYAP_N	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter	Family	Interproscan
PF15452	NYAP_C	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029353	Domain	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter, C-terminal domain	Interproscan
IPR039482	Domain	Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter, N-terminal	Interproscan
IPR052838	Family	Unconventional myosin-XVI	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47335	UNCONVENTIONAL MYOSIN-XVI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0014065	Biological Process	obsolete phosphatidylinositol 3-kinase signaling	Interproscan
GO:0016459	Cellular Component	myosin complex	Interproscan
GO:0019903	Molecular Function	protein phosphatase binding	Interproscan
GO:0048471	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0048812	Biological Process	neuron projection morphogenesis	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:2000134	Biological Process	negative regulation of G1/S transition of mitotic cell cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-