Gene detail

Detailed information of SKAU_T00225040 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00225040	T-CELL SURFACE GLYCOPROTEIN CD4	CM056382.1	74989651	75002296	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00225040

ATGGGCGCCACCACGATGTGCGGCCACTACGTCTGCCACATAAAGAAGGACCAACAGTGGGTCATCTTTAACGATCAGAAAGTGTGTGCCTCTGAGAAGCCCCCCAAGGACCTGGGATACCTGTACTTCTACAGgagagtgacagaATTCAACCTCGCAGAATCGACGGTTCCATCTTTCCTTGAAATGTCAAATAGACACACCTGCCTTTTGATTCTTGTCGCGCTGTGTCTGGGCTCAGTAAGATGTGAGGAGTTCTACATTGAGCAGGGCAAGATCGTCATGATGTCATGCTCCGGCGCTCCAAGCAAGGCGATAGAGTGGCTGTATAACAAACAGCCTTGTCTCAAGGAGGACAGCAGGACAGGGAGTATACTCAAAGGCTTGGCGCAAATGTGCTCGACGGGAAGAGCCAGGATGATCGGGAGCGACCTCCGTATCGCGCACCTGGTACATGCTGACGCTGGGATTTACACCTGTGAAAGCAAGACTGTGCGGTACGAACACCGGCTTTACGTGATCTCAGTGTCGGCCAGCCCCGCCTGCCCCCTCCTCCCGGGGACCGAGGCGGAGCTGCGGTGCCAGATTTCGGGCGGCTCCGACGTTAAGCCTGTGTGGCTCCGGCCCGACGGGAAACACGGCGAGACCTCGGAGATGGGCTCGCACACCCTGCAGTCGGTGGACCCTGCCGACAACGGGACCTGGGCCTGCCAGATCAAATCAGAGCTTCGCTTAAGCCTGTCAATCACTGTGCTAGGCCTGAGTTCGACTCCCAAACTCACGATGAGTCAGGGAGGGTCCGTCCTCCTCCCCTGCATTGCGTCCCAGAGTCTCTCCAGCATTGGCTCCCTCCGCCTCCAGGAAGGGGGCTGGGAGAGGCTCTCCCCCGGCCCCACCCGGCTGCTCTCCCTGGAGAAGAAGGGCGGGCAACTCTTCTGGAACAGCACCGGGGTGCAGCGGAACACCCTGCTGTTTGAGGAAAATAAATTAGACGCCAACCTTTCCGTGACCCTGAAAAAAGTGACCGTGCAGCAGGCTGGGCAGTACCAATGCTTCCTGACGTTTCAGGGCAAAGGAACTGTGAGCGCACAGGTGTCgctggaggtcaaaggtcagcctGGCGTGACTGGCGATGGCCCAGGCACTAACGGGCTCCAACCCAAAAACAAAGAGGGTTTCCTGGGCTTGAACCTGTGGGTCTGGCTGGCAGTCGGAGCGGGCTGTCTGGTTCTCACCCTTCTCACCATCATCATCGTGTACCTGAACCGGAGGAATAAAAGAATGAAGAGGAGAGCAAGGAAGCTGAGGTCTATGAGGCAGCCCTTGACAAACAGAGACTACTGCCAGTGCAACAGAAACACTGAAGCAGGCCGTCCAAATGGACGACAGAGGGACAAATCATCTGTCAAGGAACGGCAGCGCTGAGAAGATGGAGATTACCGAGCAGATACAGAGAGGAGAAGATGGGAGCGTGTGAATGGGGAGTGTATAAAGAGACCATAAGAATGTTTGTTGCCATTTTTTCCACCGAGTCTTgcagttttgcctgctgtctagaCAGTATCTGTACAAACACTGTACATtgagttgcacctatacctgcgtAATTAAATTGTAACAAGaggtcattactgagtaactccaacataggtaacatggaacagcagttagcgATATTCTTAATGACAcgtgaatatttttaaatattgtatttACACTCAtcggccacatcttcatgatacaatgatacacaacaaataaatattgCCTGTTCATTTCACACCGTGTCTTTATGgtatggaatgatttcatttcagcaggagagttgtaacagggctggccttgtttcacgtgtaattaagaataccactaactgctcaGCTCCTTTgtagttactcagtaataacctcttgttaccaaattagttacaacttaaatacacaggtataggtgcaactgaatgtaaagtgttaccgagtATCTAGCTGTGTTGTCTGTTCTTAACTAAGCACTGTAAGGGTTTCGGTTCCTAAGTCATCCCATGCATTGACAACCATGTGTGGAACAAACTTCCTGATATTAGCGCAAATTACACCCTCTTTTCCTACTGACAGAAATTCACCTTAAATATGTGTTCCCATCCACTTTAATAATCCTTTTGAaaaatttaaaagcctcaataaTGTCCATCCCCTGAGCCTCCTTTGGATAATCTTCAGAGATTGTGTGTCCTAAGTCTTTCTTTGTAACTTTTACATTTGATGCCTGGAAGCAATTTATTTGCCCTTCACTGTAATGAAGTGAAGGGCATGTTCTATATGGTTATGAGATTATATTAACTGCAACTGGAAATTATACTGGGGCAGGAAGTAGCTCTTAACCGGGAGATGCTGAGAACGTACCTTTCTGTAATTGtgcatttcttttgtttttattgtttgaaAAAGTTTATTCCCATTTGTAATATTGTTTCGTATtactatttttttgttgttgttgcatttttattAGTCAGCCTCACGTGTATGCATCTCAATAAACacaaccaatttaaaataaa

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF07686	V-set	Immunoglobulin V-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013106	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11422	T-CELL SURFACE GLYCOPROTEIN CD4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0035723	Biological Process	interleukin-15-mediated signaling pathway	Interproscan
GO:0042110	Biological Process	T cell activation	Interproscan
GO:0042289	Molecular Function	MHC class II protein binding	Interproscan
GO:0045121	Cellular Component	membrane raft	Interproscan
GO:0070374	Biological Process	positive regulation of ERK1 and ERK2 cascade	Interproscan
GO:1990782	Molecular Function	protein tyrosine kinase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-