Gene detail

Detailed information of SKAU_T00220940 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00220940	ATP-DEPENDENT RNA HELICASE	CM056382.1	66650540	66674135	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00220940

ATGGACCGTAGCGTAAGTTACAGGTTACAGAATACGAAGGAGGACACGTTTCGAAAACaagCCAGTATGGCAAATCTGGAGCAGTGGGTAAATGACCGTCTCCATGACATTCTGGGTTTGAGTGACAAGTATGTGGCCCAGTTCATGATTGGCTCAGCACGAAGATCATCTGGACCTCAAGACTTTGTTTCTCGACTCCGGGAGACGGGCACCATTGACATAGACCAGAGAGTGGTCGCCTTTGCAGAGGAATTATACAATAAGATACCCCGGAAACAAGCTGTGGAGAAACCAGCCCGGGCGAAAGAGCGAGAAATCCtcgagatggagagaaagaaccGCACTTATACCTTGCTGGAGGACactgagagtgagggagaggtaGCGAAGGAGCACGTGAAGGAGAAGAAAAAGGACAAGGACAGAGGGAAAAAGAGAAAGCACCTGAGGCAGAAAAGGGAGGAGAGTCCGTCTTCCAGTGAAGAAGAGCGGAACAAGAGTAAGAGACCTGCTGCTGAAGGAAATAAAGAtgcagagaaagaggaagaggaggaggaatgggagaaggaagagagagaacgaCTGCAGGACCTGGAAGAAAGGGATGCCTTTGCTGAGAGAGTGAAGCAGAAAGACAAGGATAAGACCAGGCACATACTGGAGAGGAACGACAAAAAGGCCTATGAGGAGGCCCAGAAGCGGCTGAAGATGGCTGAAGAGGACCAGAGAAAAATGCTCCCAGAGTTGAGGAAGGAGTCCCGACAGAAGTACCTGTCCACCCGAACCACGGAGAAGCTGGAGGACCTGGAAGCAGAGATCGCCGACGATGAGTACCTCTTCTCCAGCCAGGCGCTGACAGAGAGGGAGAAGCAGGATCTCCAGTATAAGCGCACGGTCCGAGACCTGGCCAGGGACTACAAGAAGGCAGGAgccaaggagaaggaggagaggaagaacaGATATTACATGCCGGAGGAGAGCAGGAGCAAGACGGTCCCCCAGCGGGACCTGGAGCTGGACCCGGAGGAGGGGGGTCGCGAGGGCGGGGGAGAGCAGGGCCGCTGGGAGGAGGAGAGGCTGAGCGCGGCAGCCCTCCACTTCGGCGCCAAGGAGGAGAGGGAGCGAGGGATGAAGGCCGAGATGGAGAAGTACCAGCTggtgctggaggaggaggagatgatCAGCTTCGTCAGCGCCGTCACCATGAAGGGAACGCGGACGATCAAGGAGCAGAGCGAGCCTGTTATCTCGCAGGCCGAGCAGCAGAGAGAGTCCATTCAGCAGGTGCGCCGGAGCCTGCCCATGTTCCCCTACAGGGAGGACCTGCTGTCCGCCATCCACCACCACCAGATCCTCATCATCGAGGGCGAGACGGGCTCCGGCAAGACCACGCAGATCCCCCAGTACCTCGTGGAGGAGGGTTACACGAAGGGAGGGATGAAGATAGGATGCACTCAGCCACGGAGGGTGGCGGCCATGTCAGTGGCTGCCAGGGTGGCGCAGGAAATGGGCGTCAAGCTGGGCAATGAGGTGGGGTACTCAATCCGATTTGAAGACTGCACCTCAGAACGCACCGTGTTAAAGTACATGACAGACGGTATGCTGCTGAGGGAATTTCTCACTGAACCAGACCTCGCCAGCTACAGTGTGGTTTTAATTGACGAGGCGCACGAGCGCACCCTTCACACCGACATCCTGTTCGGGCTGATAAAGGACATCGCCCGCTTCCGGTCTGACCTCAAGGTCCTGGTGGCCAGCGCCACCCTGGACACCGAGCGCTTCTCCTGCTTTTTTGACGACGCGCCCGTCTTCAGAATCCCCGGCAGGCGCTTCCCTGTGGATATTTTCTACACCAAGGCACCAGAGGCAGATTACCTGGAGGCTTGCGTGGTGTCAGTGCTGCAGATCCACGTCACGCAGCCGACCGGAGACGTGCTGGTCTTTCTCACCGGACAGGAGGAGATCGAGGCTTGCTGTGAGCTCTTGCAGGAGAGGTGCAGGCGTCTGGGCTCCAAAATCTCAGAGCTGATTGTACTTCCCATCTATGCAAACCTGCCCTCCGACATGCAAGCAAAGATCTTCAATCCCACGCCTCCAGGGGCCAGGAAGGTGGTGGTTGCCACAAACATCGCTGAGACCTCCCTCACCATTGATGGGATCATCTATGTCATTGACCCTGGGTTCTGTAAGCAGAAGAGCTATAATGCCCGGACTGGCATGGAGTCCCTTATCGTCACGCCCTGCTCGCGGGCATCAGCGAATCAGCGCGCAGGGCGGGCGGGCAGAGTAGCTGCTGGGAAGTGTTTTCGTCTCTACACCGCCTGGGCCTTCAAAAACGAGATGGAGGAGACAACAGTGCCTGAGATCCAGAGAACCAATCTGGGCAACGTGGTCCTGCTGCTGAAGAGTCTTGGCATTAACGACCTCATCCACTTTGACTTCATGGATCCGCCCCCTCACGAGACCCTTGTCCTGGCCCTGGAGCAGCTTTACGCACTCGGTGCGCTCAATCACCGCGGGGAGCTAACCAAGCTCGGTCGCAGGATGGCAGAGTTACCTGTGGACCCCATGCTGAGCAAGATGGTCCTGGCTTCTGAACAGTATAAGTGCTCAGAAGAGGTATTAACCATCGCCGCTATGCTGTCCGTGAATAACTCCATCTTCTACCGACCCAAAGACAAGGTGGTCCATGCAGACAACGCCAGGATGAACTTTGTTGTGCCTGGAGGAGACCACATTGTCTTGCTGAATGTCTATACACAGTGGGTGGAGAGCGGGTACTCCACTCAGTGGTGCTATGAGAACTTCATCCAGTTCCGCTCCATGAAGCGTGCGCGGGATGTGCGGGAGCAGCTGGAGGGGCTGATGGACAGGATTGAGGTGGAGGTGTGCAGCTGCCAAGGAGACGGCATGCCCATCCGCAAGgcagtGACTGCAGGGTACTTCTACCACACAGCGAGGCTCAGCAAAGGGGGCTACAAGACAGTGAAGCACCAGCAGACGGTCTATGTTCACCCAAACAGCTCCCTGTTCGAGGAGCAGCCGCGCTGGCTCATTTACCATGAGCTGGTTTTCACCACCAAGGAGTTCATGAGACAGGTGATAGAGATTGATAGCGGCTGGCTGCTGGAAGTGGCCCCACACTACTACAAGAGCAAAGAGCTGGAGGACGGCAGCAGTAAGAAGATGCCCCGCAAGCAggggaaggcacgggaggagctgggGGCAAAACATTCTTTCACCATGAGTGATGAGAGAGAGAATGCCAATGGCAGCCAAGGTGCCAATCTCAAACAGCTTCTGAATGAACAACCCAGAGCTGAAGGCAAGGGCAAGCCCAGCAGCAGGCCTGGCCGGGAGAGGGAACgagagaggaaagagggaggagGGAAGGAACGAGGGAGCAAGCGAGTGGTCCGCAGCAGGAGCAGCGATGCTGAGAGAAGAGGGAGGGGGTCCAGGCGAAGGAGAGACCacgagagggacagagggaagaGGAGGGAGCGTGGCAGAAGTGAggaagggagagacagacagaaggagGGCCGAAGGGGCTCGGGCGAACAAGAGGAAGACGATGTGGAGGACACAGAGTGCGTGGTGTGTTTTTGTGCCTATGATAACGTCTTCAAAACGCCAAAGCTCCTGTCCTGTGGCCACACTTTCTGCCTGGAGTGCCTGGCACGCATCAATGTGTCCTTGCCTGAGATCAAATCCCTGCCCTGCCCCGTGTGCCGGGAACTCACCGACCTGCCCCACGGCCGGGACCTGCCACATCTGGGCAACAACCAGGATATATTCCGCAAGCTGCCCCCCGAGATGCAGAGAGCGCAGTCTGTGCGCTTCAAGCGCAGCAAGGGAAAACTGGTCCTGAAGAATCCCCTGGCCGGGACCCACAGCAGCCCCACCAAGCCCAGCCTCACCCTCCCCAACTTCAAGAAGAAAGTGCAGGAGGGGCCAACAGGCGAAGGGGGCGACCTGCAGCTGGCCAACCTGGAGCATGGCCACACCCCAGCCACCAGCGTGGACGTGGGGAGGCCCCCCAACAGGGTCAGGGGTCGTCTGAGGCGACTCTTCCGCTCTGACCAGTGCTACTATGCCGCGGTGGGTTCCATCATCACAGTGGCAGTGGCCTTGATGCTGATGGGGATCTTGGCATTTGTGGTGGTGCCCAATGTTGCAAACAACAGGCCCCCCTTAGGAAACAATTCTCTTCCAGGAAATGGGAGAGACATTGGACCCTGA

Transcript

SKAU_T00220940

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-