Gene detail

Detailed information of SKAU_T00206050 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00206050	STRAWBERRY NOTCH-RELATED	CM056381.1	84349919	84389656	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00206050

ATGTTAAAAACGACGTCAATGATGTCGATTGCATCGGGCAAAATATCGACTGATTGGAAAATCATCTCAGTATGGTCCGTGATCAATTTAATTTTTGTGCCACCGTCATTTGGTGAAATGTACACCTCTGTGAAGAACATTCAGCAAGCTATTTCTGTTGAAAAAGAGCTTCTAAACCATCTAAGGGCATACATCGAGGATGAAACATTACGACTAAACGACATAAAGAGATTCTATGCAAAGGCTTCAGATTTGCACAGTGAGGTGTATAGAGGTCCGGAGACTGCAATGGCAAACCCCTTGGTGGCATTCACGTTGATCAAGCGGCTGCAATCTGAGTGGATGAACATCGTGTACAGCAACGAGGCCAAAGAGAATGCACAAGCCTTCAGGGCTGGCTATGAGAAAGAGGAGAGCAGTCTGCCCAAGTTTGAGGATCTTCAGGGGGCGGCCAAGGGGTTGATGAGGCTACAGGACGTGTACGCCCTACGTGTGGACGGGCTTGTGAATGGCCACTTCCAGACGGTCACGAGAGGGAACACCGTGGATATCTACAGACCAGCTGTGTCCATCCCTCTCTCAGGGGATGACTGCTTCCTGGTGGGGAAGGTGGCCTACGAGCATGAGGACTACTACCACTCCGTGCAGTGGCTGGAGGAGGCGGCGCGGCTTTTCCGAGGGGAGCGAGGGGACTGGATCCCCGAGAACGAGGGGACTCTGGAAGACACCTTGGATCATCTCGCCTTCTCCCATTTCAAGacAGGAAATGTCTCCTATGCATTGAGCCTTTCTCAGGAGCTGCTACGCTATGACCCCTCAAACAGAAGGGTTTTGCGCAATGTGGAAAAGTACGAGAAGCTCCTGGTCACGTCTCCAACCCTGGACAGTCCTGAAATTGTGCTACAGAGACCCAACACCACCTATCTGATTACAAGAAACACATATGAGTGGCTCTGTCAGACACTGGGCTCACAGCCAAAGCATTATGAGAACCCCGGGCTGTTCTGCGACTATTTCACAAATGGCAGCCCCAGCCTCCTCTTGCAGCCAATGAGACGAGAGGTTGTGAGCGTCCAGCCCTACGTGGTCCTGTACCACAGCTTCATCACCAGCAGCGAGGCACAGAGCATCAGAGACCTTGCCCAGCCTGGGCTGAGAAGATCTGTTGTCGCATCAGGAGAGAAGCAGGCCACTGCAGAGTACCGCATCAGCAAGAGTGCCTGGTTGAAAGAGACAGCGCACCCTGTTGTTGTGAGAGTGGACCAACGGATCACTGCGCTGACCGGGCTGAACCTCCAGCCACCATACGCTGAATACCTGCAGGTGGTGAATTATGGGATAGGTGGCCACTATGAGCCTCACTTTGACCATGCCACGTCTGCATCAAGCCCTCTTTATAGACTCAAAACCGGGAACCGTGTGGCGACAGTTATGATATACCTCAGTTCCGTGGAGGCAGGTGGATCTACAGCCTTCATCTACGCCAATTTCAGCATTCCTGTTGTGGAGAATGCTGCCCTCTTCTGGTGGAATCTACACAGGAACGGACAGGGGAACGGGGACACACTGCATGCAGGCTGCCCCGTCTTGGTTGGGGACAAATGGGGTAAGAGGCCGAGCACAATGGGTGTTTTCCAGTCACTTGTGCAGAAGCACTTCCCCTCAGAGAAGCAGAAGAGAGAGAAGCCAGCTGGGAACAAGAGGAAACGTAAACCCCGTGGTCGGCCGCTGAAGTACCCCAAATCATGCCAGGAGATTGGGGGCGTGATCAGCATCAGTGATGACAGCAGCTCTGAGTCTGATGGGCTGGACAGTGACTCCAACTCCTCCCCCGAGTCCCTATTGGACAACGATGATGTCATCTTTGTCAACCACACCAGCTCCCATACCGTGAAACTAGAAGAAATGAAGCAAGGGCTGTTGAAGAAGATCTCGGAGCTGGGAAAGGAACTACCTCTAAACACCCTGGATGAGCTGATCGATCGCTTCGGAGGTCCAGAGCGCGTCTCAGAGatgacgGGGCGGAAGGGCCGGGTGGTCAGGCGGGACGGGGTGGTCCGGTACGAGTCCCGCGCTGAGCAGGGCACCATCGACCACATCAACATCCAGGAGAAGAGCCGCTTCATGAACGGAGAGAAGCTGGTGGCCATCATTTCGGAGGCGGCCAGCTCGGGCATCTCCCTGCAGGCGGACAGACGGGTAAAGAACCAGTGCCGCAGGGTCCACATGACCCTGGAGCTGCCCTGGAGCGCCGACCGCGCCATACAGCAGttcgGCCGGACTCACCGCTCTAACCAGGTCACCGCTCCGGAGTACATCTTCCTCATCTCAGAGCTGGCGGGAGAGAGACGCTTCGCCTCCATCGTGGCCAAGAGGCTGGAAAGCCTGGGGGCTTTGACTCACGGAGACCGGAGAGCCACAGAGTCCAGAGACCTGAGCAAGTACAACTTCGAGAACAAGTATGGTACTAAGGCTCTGGATAAGATCACCAAAGCTATCCTGGGCTACATCGAGAACAAAGTCCCTCCTCCCAAAGGCTATCCAGGGGGTGATGCCATGTTCTTCAACGATATGAAGCGTGGTCTGATGGACGTGGGGATTTTCTGCAGGGAGCCACGTACTGGGATCAACACTGAgaaagactgcagtatcactaagtTCCTTAACCGGATCCTGGGCCTGGAAGTGCACAAGCAGAACTCGCTGTTCCAGTACTTCACTGACAACTTTGACTACCTGATCGAGAAAGACAAGAAGGAGGGCAAATACGACATGGGAATTCtggACCTGGCTCCAGGCAACGATGAGATCCACGAGGAGACGCAAGAGAAGTTCCTGACCAATGGAAACCCCCAGGAGGGTCAGGTGGTCCTGTACAAGATCAGTGTGGACCGGGGGATGCCTTGGGACGAGGCCCGGGCGAAGTGGCAGACTCTCACTGGCCCTGACGATGGATTCTACCTCTCACACAAGctTCGGGGAAACCAGCCTTGTGTCCTGTTGGCGGAGCAGGGTCGTGGACACAGCTTCATCCTGTACAAACCCAACATCGGCAAACAGGCCCACCCAGAGAGCCCAGACAACCTGCAGCGTAGATACTACAAGGTAACACCTGAAGAAGCCAAGGAGTACTGGGAGACACAGTTTACTTTCTCCTTTAAGAAGTGTAGCCATGCTAACTGGAACGGGCGGTGTAAACAGGTGGAGCAGGGCCATGAGTGCTGGTTGGGCATGCGTCTGAGGCAGTACCACATGCTGTGCGGAGCGCTCCTCCGCGTGTGGAAGCGTGTGGCTGACGTCGTCTCTGACATCACCGCCTCCAGCATCCTGCAGATCGTGCGGCTCAAGACCAAGCAGCACAACAAGCAAGTGGGTATAAAGATCCCGGAGGCGTGCGTTTCGCGGGTGAGGGCGGAGCTTGCGCAGATGGACGAGGCGGTGAAGCGCgggcggagagagagggagcgtcgGGCGGAGGAGGAGAGAGCGGCCCAGGAGCTGGCCAAGGAGCTCGAGCGGCAACAGCAGCTGCTCTACTCCCGCTACTTCAACTcctgccaccagagggcgcccctCGACCTGTCGCGCCCCCAGGGCCCCTCCCCGTACCCCGACCCcgaccccgcccccgcccccccgccaccGTACCTCATGCAGCCCCGCCCCCAGAGGAGCCTGCCTGCCGACGGCGTCCTGGACCTGACCACCAGCAGCCCCTCGGTCTCCCCCCGAGCCAGCAGGGGGCGCAGAGGAGCCCTTCGACCTGGAGTCGCTGATCGCGCAGTCCAAGCTGGGCTCCAACCTGCCGCACGACGGCTTCCTCGACTGCCCCTCGCCCGGCTTGCCTTCGTCCTACCAGCTCACCGCTCCGGcccatCTGCGTCCAACGTCCCGCCGCTAGCCCCGCCCCCCGGCTGTTCCCCCTCCTTCTTTCAGTACCCAGTCTCTGCCCCCGCGGACCAGCAGCCCCGGCCTTTGCCCAACGGGCACTGTGGAGCCGACGCCCTCTTCAACGTCCGAGAGGTTCTGGACAACATGTTCCGGAATAACCCGGACCGTCAGTCCGTCATCCAGTACCCGCTTCACCGACTAGAACCTGAAACACAGGGGCGTCCGCTGCTCTCCCCCACCatccgcttcctggagccgtgCGGGCAGGGGAGAGAACCGTGCCCTAAAAACCACGCCCTCCGCTCCGCCCTCCCGAGCGCTCTGCGGGGTGACCGGCGGGGTGACCGGCGGTGCGTTTACGGAAATCCCTGTCGCGCGCGGAAGGAGCAGGCGGGCAAACAGCCGTGCCGCGCGCCAAGAGACCGGCTCATCGAATGA

Transcript

SKAU_T00206050

AACAGCAGTAACTCCGTGCGCAGTGCTACGCCTGTAACAtacgtaggctatagcctatatgccCAACTGTGAAATTTTCAGCTTGTAGAAGAGCCGAGAGCCAGCCCTCTTGTCTCTCAGAAGGACGCTCTTGCATTTCTGTCTGTATGGACGGCATTGGACGCTCAAATAGAACTACAGTTTAAAGCAAGTTGCTACGCCGCACGGTAGCCTAATGCTCAGAAATTGGAATAATGAGCCAGAAAACATGACATCAACATGTTTTTGTTCGCAATTTTTTTTGGCTGGAGATAAACTGCGGTAAGAAACACTGACACATTTACAGTTTACATTAAACTTTGATCCAAGCATGATATGTTAAAAACGACGTCAATGATGTCGATTGCATCGGGCAAAATATCGACTGATTGGAAAATCATCTCAGTATGGTCCGTGATCAATTTAATTTTTGTGCCACCGTCATTTGGTGAAATGTACACCTCTGTGAAGAACATTCAGCAAGCTATTTCTGTTGAAAAAGAGCTTCTAAACCATCTAAGGGCATACATCGAGGATGAAACATTACGACTAAACGACATAAAGAGATTCTATGCAAAGGCTTCAGATTTGCACAGTGAGGTGTATAGAGGTCCGGAGACTGCAATGGCAAACCCCTTGGTGGCATTCACGTTGATCAAGCGGCTGCAATCTGAGTGGATGAACATCGTGTACAGCAACGAGGCCAAAGAGAATGCACAAGCCTTCAGGGCTGGCTATGAGAAAGAGGAGAGCAGTCTGCCCAAGTTTGAGGATCTTCAGGGGGCGGCCAAGGGGTTGATGAGGCTACAGGACGTGTACGCCCTACGTGTGGACGGGCTTGTGAATGGCCACTTCCAGACGGTCACGAGAGGGAACACCGTGGATATCTACAGACCAGCTGTGTCCATCCCTCTCTCAGGGGATGACTGCTTCCTGGTGGGGAAGGTGGCCTACGAGCATGAGGACTACTACCACTCCGTGCAGTGGCTGGAGGAGGCGGCGCGGCTTTTCCGAGGGGAGCGAGGGGACTGGATCCCCGAGAACGAGGGGACTCTGGAAGACACCTTGGATCATCTCGCCTTCTCCCATTTCAAGacAGGAAATGTCTCCTATGCATTGAGCCTTTCTCAGGAGCTGCTACGCTATGACCCCTCAAACAGAAGGGTTTTGCGCAATGTGGAAAAGTACGAGAAGCTCCTGGTCACGTCTCCAACCCTGGACAGTCCTGAAATTGTGCTACAGAGACCCAACACCACCTATCTGATTACAAGAAACACATATGAGTGGCTCTGTCAGACACTGGGCTCACAGCCAAAGCATTATGAGAACCCCGGGCTGTTCTGCGACTATTTCACAAATGGCAGCCCCAGCCTCCTCTTGCAGCCAATGAGACGAGAGGTTGTGAGCGTCCAGCCCTACGTGGTCCTGTACCACAGCTTCATCACCAGCAGCGAGGCACAGAGCATCAGAGACCTTGCCCAGCCTGGGCTGAGAAGATCTGTTGTCGCATCAGGAGAGAAGCAGGCCACTGCAGAGTACCGCATCAGCAAGAGTGCCTGGTTGAAAGAGACAGCGCACCCTGTTGTTGTGAGAGTGGACCAACGGATCACTGCGCTGACCGGGCTGAACCTCCAGCCACCATACGCTGAATACCTGCAGGTGGTGAATTATGGGATAGGTGGCCACTATGAGCCTCACTTTGACCATGCCACGTCTGCATCAAGCCCTCTTTATAGACTCAAAACCGGGAACCGTGTGGCGACAGTTATGATATACCTCAGTTCCGTGGAGGCAGGTGGATCTACAGCCTTCATCTACGCCAATTTCAGCATTCCTGTTGTGGAGAATGCTGCCCTCTTCTGGTGGAATCTACACAGGAACGGACAGGGGAACGGGGACACACTGCATGCAGGCTGCCCCGTCTTGGTTGGGGACAAATGGGGTAAGAGGCCGAGCACAATGGGTGTTTTCCAGTCACTTGTGCAGAAGCACTTCCCCTCAGAGAAGCAGAAGAGAGAGAAGCCAGCTGGGAACAAGAGGAAACGTAAACCCCGTGGTCGGCCGCTGAAGTACCCCAAATCATGCCAGGAGATTGGGGGCGTGATCAGCATCAGTGATGACAGCAGCTCTGAGTCTGATGGGCTGGACAGTGACTCCAACTCCTCCCCCGAGTCCCTATTGGACAACGATGATGTCATCTTTGTCAACCACACCAGCTCCCATACCGTGAAACTAGAAGAAATGAAGCAAGGGCTGTTGAAGAAGATCTCGGAGCTGGGAAAGGAACTACCTCTAAACACCCTGGATGAGCTGATCGATCGCTTCGGAGGTCCAGAGCGCGTCTCAGAGatgacgGGGCGGAAGGGCCGGGTGGTCAGGCGGGACGGGGTGGTCCGGTACGAGTCCCGCGCTGAGCAGGGCACCATCGACCACATCAACATCCAGGAGAAGAGCCGCTTCATGAACGGAGAGAAGCTGGTGGCCATCATTTCGGAGGCGGCCAGCTCGGGCATCTCCCTGCAGGCGGACAGACGGGTAAAGAACCAGTGCCGCAGGGTCCACATGACCCTGGAGCTGCCCTGGAGCGCCGACCGCGCCATACAGCAGttcgGCCGGACTCACCGCTCTAACCAGGTCACCGCTCCGGAGTACATCTTCCTCATCTCAGAGCTGGCGGGAGAGAGACGCTTCGCCTCCATCGTGGCCAAGAGGCTGGAAAGCCTGGGGGCTTTGACTCACGGAGACCGGAGAGCCACAGAGTCCAGAGACCTGAGCAAGTACAACTTCGAGAACAAGTATGGTACTAAGGCTCTGGATAAGATCACCAAAGCTATCCTGGGCTACATCGAGAACAAAGTCCCTCCTCCCAAAGGCTATCCAGGGGGTGATGCCATGTTCTTCAACGATATGAAGCGTGGTCTGATGGACGTGGGGATTTTCTGCAGGGAGCCACGTACTGGGATCAACACTGAgaaagactgcagtatcactaagtTCCTTAACCGGATCCTGGGCCTGGAAGTGCACAAGCAGAACTCGCTGTTCCAGTACTTCACTGACAACTTTGACTACCTGATCGAGAAAGACAAGAAGGAGGGCAAATACGACATGGGAATTCtggACCTGGCTCCAGGCAACGATGAGATCCACGAGGAGACGCAAGAGAAGTTCCTGACCAATGGAAACCCCCAGGAGGGTCAGGTGGTCCTGTACAAGATCAGTGTGGACCGGGGGATGCCTTGGGACGAGGCCCGGGCGAAGTGGCAGACTCTCACTGGCCCTGACGATGGATTCTACCTCTCACACAAGctTCGGGGAAACCAGCCTTGTGTCCTGTTGGCGGAGCAGGGTCGTGGACACAGCTTCATCCTGTACAAACCCAACATCGGCAAACAGGCCCACCCAGAGAGCCCAGACAACCTGCAGCGTAGATACTACAAGGTAACACCTGAAGAAGCCAAGGAGTACTGGGAGACACAGTTTACTTTCTCCTTTAAGAAGTGTAGCCATGCTAACTGGAACGGGCGGTGTAAACAGGTGGAGCAGGGCCATGAGTGCTGGTTGGGCATGCGTCTGAGGCAGTACCACATGCTGTGCGGAGCGCTCCTCCGCGTGTGGAAGCGTGTGGCTGACGTCGTCTCTGACATCACCGCCTCCAGCATCCTGCAGATCGTGCGGCTCAAGACCAAGCAGCACAACAAGCAAGTGGGTATAAAGATCCCGGAGGCGTGCGTTTCGCGGGTGAGGGCGGAGCTTGCGCAGATGGACGAGGCGGTGAAGCGCgggcggagagagagggagcgtcgGGCGGAGGAGGAGAGAGCGGCCCAGGAGCTGGCCAAGGAGCTCGAGCGGCAACAGCAGCTGCTCTACTCCCGCTACTTCAACTcctgccaccagagggcgcccctCGACCTGTCGCGCCCCCAGGGCCCCTCCCCGTACCCCGACCCcgaccccgcccccgcccccccgccaccGTACCTCATGCAGCCCCGCCCCCAGAGGAGCCTGCCTGCCGACGGCGTCCTGGACCTGACCACCAGCAGCCCCTCGGTCTCCCCCCGAGCCAGCAGGGGGCGCAGAGGAGCCCTTCGACCTGGAGTCGCTGATCGCGCAGTCCAAGCTGGGCTCCAACCTGCCGCACGACGGCTTCCTCGACTGCCCCTCGCCCGGCTTGCCTTCGTCCTACCAGCTCACCGCTCCGGcccatCTGCGTCCAACGTCCCGCCGCTAGCCCCGCCCCCCGGCTGTTCCCCCTCCTTCTTTCAGTACCCAGTCTCTGCCCCCGCGGACCAGCAGCCCCGGCCTTTGCCCAACGGGCACTGTGGAGCCGACGCCCTCTTCAACGTCCGAGAGGTTCTGGACAACATGTTCCGGAATAACCCGGACCGTCAGTCCGTCATCCAGTACCCGCTTCACCGACTAGAACCTGAAACACAGGGGCGTCCGCTGCTCTCCCCCACCatccgcttcctggagccgtgCGGGCAGGGGAGAGAACCGTGCCCTAAAAACCACGCCCTCCGCTCCGCCCTCCCGAGCGCTCTGCGGGGTGACCGGCGGGGTGACCGGCGGTGCGTTTACGGAAATCCCTGTCGCGCGCGGAAGGAGCAGGCGGGCAAACAGCCGTGCCGCGCGCCAAGAGACCGGCTCATCGAATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08336	P4Ha_N	Prolyl 4-Hydroxylase alpha-subunit, N-terminal region	Family	Interproscan
PF13640	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan
PF13871	Helicase_C_4	C-terminal domain on Strawberry notch homologue	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013547	Domain	Prolyl 4-hydroxylase alpha-subunit, N-terminal	Interproscan
IPR026741	Family	Protein strawberry notch	Interproscan
IPR026937	Domain	Strawberry notch, helicase C domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044862	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12706	STRAWBERRY NOTCH-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004656	Molecular Function	procollagen-proline 4-dioxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-