Gene detail

Detailed information of SKAU_T00184250 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00184250	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 21	CM056381.1	6426863	6451285	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00184250

ATTCAGTCAGCGCTCAGCGTTTGCTGCAGAGAGGGTGAAGAAACCTGGACAAACAGAGACGAAATTTCAATCTTAATCCAGCATCGCTATGGGATTTATACCTTTCTTCCAGAACGAAGCTCTCATCCCATACTATCTCAAACCCGTTCATTTCGTGACACTGACTTTAAAAAACTGCCGGTGGAAGAAATACCAGTTTTAGATTAGGCTAGTAATAGGCAAGTAATTGTAATGTGGGTGTCCTCTTGATGCAGGGAGATGTGCCGCCTATCAAATAGGAAGCATTATTAACTCAGTCATAGAAATGGGCCGATTTTGAGCTACATGAATTATATTGGAACATGCTTGGGAAAATGTCAGTGATCTATATACCTCTGACGctGCTGCTCGCGCTAGTCGGTGACGTCCCTGCCCAGGCGGCGGCTATCGGCGGCGCCACGGAGTCGCTCTCCGCCCTCCAGTACCGCCACACCGACCCCAGAACCGGCGGACAGCTGATGTGCAACAAGTGCCCAGCGGGCACGTACGTGTCCAAGCACTGCACCCAAACCGCCGTGCGGGAATGCAGGCGTTGCCCCGGCGACAGCTACACGCGCAAGGAGAACGGGATGGACAAGTGCCACCGCTGCCGGCCGCCGTGCGCCCCGCCCTTCGCGGAGAAGGAGGCGTGCACGGCCTCGACGGACCGCGAGTGCGCCTGTCCGCCGGGCACTTTCGCCAGCGAGGGGGGGTGCAGGCCCCACTCCGCGTGCGCCAGGGGCTGGGGCGTCCGGCGGTCGGGCGGCGAGTCGGAGGACGTTAGGTGCAGGCAGTGCCCGCGGGGCTCGTTCTCCGACACGTCCTCCAGCGTGGACAAGTGTAGGCCCCACACCGACTGCCTGGCCCTGGGTCTGGTCCTCAGGGTCCGGGGCTCGAAGGATTCCGACAACACCTGCGGCGCCCCGCCCACCGACGGCCCGTCCCCGCCCTCGAGCCCGGAACATTCTGCGCTGGACGAAGCTTCCTCAGCACCCATGGTGCACAAAGACACCGTTGACTTGACATCAGGTGTTAAGGACTTGGAGCTTTCACTGAGCAGCGAAGGAACTCTCCCAAGCGGTACGGACACCAGCACTGGGGACTCACCCAACATGGCCGCCAACATGGCCGCCAACATGGCCGCCGCCATCGCCGCCGTCCCTGCCACTGCCACCTCCGAGCCCGAACCCGCCGCCCCCCCTCGGATGCGCCACGCGCACGCCCGCGAACACCAAAGCCGCCAGCCGGACGGCGAGCAGGCGGCGGCCTCCCCGGCGGCGGCCTCCCCGGCGGAGGGAAGGCCCCAGGGCTCCCCCTACAGGCCGCCTCGCAGGGGCGCGCCCCGGCCCAGCGGGCACAAGCACTTTGACATTAACGAGCACCTGCCCTGGATgatagtgctgctgctgctgctcgtgCTGGTGGTCATCGTGGTGTGCAGCGTGAAACGGAGCTCGCGGGCGCTGAAGAAGGGACCCACCCAGGACCCCAGCAGCATCATGGAGAAGGCCATTCAGAAGAAGTCTTCCGCCCCCACGCAGGTCAAAGAGAAGTGGATCTACCACTCCAACGGCCAGGGTGTGGATATCCTGAAGCTGGTCTCTGCTCAGATTGGTAGCCAGTGGATCGATATGTACCAGTACCTGGCCAACGCCACCGAGCGAGAGGTGGCGGCCTTCTCCAACGGCTACACGGCGGACCACGAGCGGGCCTACGCCGCGTTTCAGCACTGGACCATCCGGGACGGCGACGCCAACCTCGCCAAGCTCATCGGCGCCCTGCACCGCCAGCGACGTATCGACGTGGTGGAGAAGATCCGCTGCGTGATGGAAGACAATCCTCAGTTCGATCTGAACCAGCTGATGACCTCTGTGAATGTAACCCAATGCCTCAGCCCAACCCACAAGCCTTTAGAGTCGCCGGGCGTGGCCGCAGAGCGGTCCCCGGTGGACAGGACCAAGGGCTTCTTCGCCGACGAGTCCGAACCCCTGCTGCGCTGTGACTCCACCTCCAGCAAAGACTCCGCCCTCAGCAGAACCGGCTCTTTCATTACCAAAGAGAAAAAGGACACGGTTCTACGGCAGGTCCGGCTGGACCCATGCGACCTGCAGCCCATCTTCGACGACATGCTGCACATCCTGAACCCCGAGGAGCTGCAGGTCATCGAGCAGATCCCCACGGCCGAAGATAAGCTGGACAGGCTTTTCGAAATCGCCGGAGTCAGGAGCCAGGAGGCCAGCCAGACGCTCCTGGACTCTGTATACTGCCATCTGCCAGACTTGCTGTAACTCAGGCAACccgcaaaagggggggggggtccccatTTTCAACCCTTCCCCACATGCTGGCCAGGcggtggggggagagagggggggggggggggtggcctgTCGGTAGATGGCCACAGCTGCTTCACCACCGTGCACATGAATATAAAAACTCCGCTTGCAATCGCATCAATGTAGCATTGAAAAAGAGTGTCTGTTACGATCTGGAGCTTCATGTCGGTGTGTTCTAAATAAGACATGGTCAGTGTTCATGCTgtaaacacacgcacatatatacacaaccacagacaaATACATACGCACCCAGACAGACACCCCACACACGTCTGCAACACTAATGATACGTAACATAATTTATGCActaattttatatttaaaaacatcTTAACCTTATGGCATTCAGCCAAGTGTGCTTCTATTGCCTATGTTTCAAGTGCTGTTTACTAACGtgtcatgtttgtttgtttttttctatcacaCTAGCTATTGTTTTCATGATGAGTATCATTGTACCTTCTATGCTTTTTAGCAGCTATGTTTATGTTTAACATAATTCCATGGGCATTTAAAAGTATACGTAGGTACAATAAAACGATCTCGCATAACGCGAGGTTCACATTCTGTGCTATCTACTTGAATTTTACTGTCACACTTTGGGACTGTGGTAATTCACCTAATGAGAAAATGCAGCACACACTCAAATATTCCTGAGCATCCTTTAAAGGCACCAAAAAAGAAGAACGAAATCAAAGATAATTTGTTTTCTGTACAAAGTCTGAAGACACGTTTCGCCGATGTTGAGAACACGTTTTGCCGATGTTGAGACACCAGAATGTGTTTTTGCCAAGCTAGTCATGATCAAGCAACTACTTTGGTGCTAGACTTCAAAAAGCCCTGCTTGTACTGGCTTCCCAATACGGTGACATGGGGTGAACTGATTGTGTTTTATCTACATGGACTGTTTGGGAAGAATGGATCCGTGTCATTGCATTTGCTGGATTTAAATGAAGGGTGGTATTAATGCAGTACGCTTGCCCAGTGGGGACTCAATGTACTTAAGCGTGAACATGAAGTGAATTTGAAACATGAAGCTGATGTCTGATTATTATATCCCGGTGGCTGTTTTAATACTTAACACTTGTAACCGATAAGTTTATTATTGTAACAATGTTCAATCAAATGATTAAAGTTCAACCTTTGTTATAATACGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF00531	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR022330	Family	Tumour necrosis factor receptor 21	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46921	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 21	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002250	Biological Process	adaptive immune response	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006959	Biological Process	humoral immune response	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0030889	Biological Process	negative regulation of B cell proliferation	Interproscan
GO:0031642	Biological Process	negative regulation of myelination	Interproscan
GO:0042130	Biological Process	negative regulation of T cell proliferation	Interproscan
GO:0051402	Biological Process	neuron apoptotic process	Interproscan
GO:0097252	Biological Process	oligodendrocyte apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-