Gene detail

Detailed information of SKAU_T00181800 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00181800	TRNA (URACIL-5-)-METHYLTRANSFERASE	CM056380.1	116052207	116072320	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00181800

ATGGTATTTAGGTGCAAACAGAATTTTAGAGCAGTCCCAAGAAAAGCTGATCTGAGCAGTTCAGTAAAGGATGTGATCGCCTCCAAGGACCTCAAACACTCAATAGGAGCATTAGCTCAGAAAGGGAAGAGAAGGAAACACCGGAAGCCTCAAAGGGGTGAGGCTGTGTCCTGGGAAGAGCGGTTGGCGGATGTCGTGACCCCTCTGTGGCGGCTGAGCTACGAGCAGCAGCTGCAGCTCAAACAGGAGCGGCAGGAGGACATTGTGCGCTGCCTGTCCGATGCTGGGGCTTATCGCTGCCCCCCTGTGCTGCCCATACGACCGTCACCAGTCACGGACGGATACCGCAACAAGTCCACCTTCTCTGTTAACGTCGGGCCAGGGGGCGATCCCAAGACGGTGGGGTTCTACGTGGGCACTGGGAAGGAACGCAACATCGTGTGTGTCGGGGGAGACCACCTGCGGAACGTGCCGGAGAAACACAAGCTGGTGGCGCGATGCTACGAGGAGTTCCTCCGTCTCTCCCCTCTGGACCCCTGCCTCCTCTTCCACAAGGGAGGCCACTGGAGGGAGATTACGGTCAGGACTAATTCAGCAGGCCACACCATGGCCATAGTGTTCTTCCACCCTCAGACTATGGCTCTGGATGAGGTCCAGCTCCATAAGGCGGCTTTGCTGGAGTATTTCACCCAGGGCCCCGGAGCCGACTGCCAGCTGGACTCTCTGTACTTCCAGGAGAGCTCCATGACCCGCTGCAGTCATCAGCAGGCCCCGTTTCAGCTCCTCTACGGGGCCTCGCACATCTACGAGGACCTGCTGGGGCTCAGGTTCCGTATTTCTCCTGACGCCTTCTTCCAGGTGAACACGGCGGGCGCAGAGGTGCTGTACAACAGCATTAGAGAGCTGTGCGCTCTGGAGGATGGAGGCAAAGCTGTCGGAGAGCTGAGTGCTCTGGGGAATGTAGGCGAAGCTGTCGGAGAGCTGAGTGCTCTGGGGAATGTAGGCGAAGCTGTCGGAGAGCTGAGTGACATAAGTGAAGCAGGATTGGGCGGAGCCACGCTGCTGGATGTGTGCTGTGGGGCGGGGGTTATTGGCATCTCCATGGCTAGCGCGGTGAGCAGGGTGATTGGTGTGGAGATCGTGGAGCAGGCCGTGGAGGATGCCAGGTACAACGCCACACTTAACCACGCGTGGAACTGCAGCTTCCTCCCTGGGAAGGCTGAAGAGGTACTCCCAAGCTTACTGCCCTCACTCAGCTCCCAGCACGGCCTGGTCGTCGTGGCGAACCCCTCCCGGGCCGGCTTGCACTACAGGACGGTCCGAGCGCTCCGGAACCTTCCATCCATACGCAGACTGGTTTACGTGTCCTGCAAGCCGGAGGGAGAGGCCACAAGGAACTTTCTGGAGCTCTGCTGCCCCGCTGACCCGCGGAAGAAGCTGACGGGAGAGCCGTTCACCCTGAAGGCCACCGTGCCAGTGGACATGtttccccacacactgcactcGGCGGTGTGCTTCTTCATAAGTGCCCTCGGAATAACGGCGGGCGCCATCGACTGTGGAGCCACCGCTCTTACAAGGCCTCCCTGCCTCTGCGAGTCTTCCTCGCTGTTGCCAATTCATGGCTTTTCAGAACGATATCTACGAGTGGGCTCGGGGACCACAGAGTCCATCACAAAATTCTCTGAGACTGACGCCGACCCCCACAATGCCGTGCGAGGGTTCTTCTTCTCGCACATTGGCTGGCTGCTGGTGCGGAAGCATCCGGACGTCATCGAGAAGGGTGGCAAACTGGAGCTGGCTGATCTGAGGGCTGATAAAGTCGTCATGTTCCAAAGAAATGTTGCTGTTATGTTTCGGAATCCCGATGCTGGTGCCCTGGTACCTGTGGGCGGAGTCTTTATGGTGGCGTACTTCGTTCCGTGCCTCCTGAGGTACACCATCGTCCTCAACGCCACCTGGCTGGTGAACAGCGCCGGCCCATATGTGGGGGAAACAGACCCTACGACCAGCACATCAACCCACGAGAGAACAAGGGAAGGGTTTCATAACTACCACCACACGTTCCCCTTCGACTACTCCACCAGTGAGCTGGGTGCAGaaatgatggccgccaacgatgttggagacgtcaaggagagcgctatgcatcagccactgttgtcaccagacgaccctttgacctga

Transcript

SKAU_T00181800

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847	Methyltransf_31	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010280	Family	(Uracil-5)-methyltransferase family	Interproscan
IPR015876	Family	Acyl-CoA desaturase	Interproscan
IPR025714	Domain	Methyltransferase domain	Interproscan
IPR025823	Family	tRNA (uracil-5-)-methyltransferase homolog B, chordates	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR045850	Family	tRNA (uracil(54)-C(5))-methyltransferase, metazoa type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45904	TRNA (URACIL-5-)-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0016717	Molecular Function	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	Interproscan
GO:0030697	Molecular Function	tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-