Gene detail

Detailed information of SKAU_T00177770 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00177770	UNCHARACTERIZED	CM056380.1	101646383	101696283	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00177770

atgtggcggtggtccaggccagtggaggggtggctgccgctgacgcccatggagctgcgagaggcccaggaagcagacagcacgctgggcaaggtgcGGGGCTGGCTGGAGGTGGGGCAGCGtcccgagcggtcggtggtgtcggcagagagcccagagcttAAGAGCTACTACAGCCTGaacagcagcttggtgcagcacgacggtctcctctacagacAGTGGCAGGCCCCAGGccattgctgcgactcctgcatggcacagaaagggcctagtcaacgctcccgagcacccctgcaacaacacctggtgggggtGGATGTtctcgggcccttccccgtcaccgactccggcaatcgctacattcttgtagcgatggattacttcaccaagtggccggaggcattcgctATACCAGACCAGAGTGCGGTGACGACGGCGGAAAGGCTCGTGGAGgagatgttcacccgtttcggggcccctgccgagctccacagtgaccaggggcgcaacttcgCGTCCCAGGTGCTGGCTGAGGTCTGCAAACGGttgggcgtgacaaagacccgaacgacgccactccatccccAAAGCGACGGCCTCATCGAGCGATTTAACtgcacgctagctacccagctagccatcttagccagccagcaccagcaggactgggatcgccacctgcccttggtcctgtgggcttacaggtcagctgtgcaggagtccagccaactcacccctgctgccctgatgttcggacgATTGCCAGCAGCCCTCATCATGCTCACCCCAGCGTTTGACCTCAGCCAGGAGGCGGACTTCCTCCTCTTGAGCATCCGTGTTCCCTACAGCAGGACGTCCGAGTTTGACCTCTACATCGACGGGGAGGATTTCAAGCTCTACGCCAAACCGTACTTCCTCAGGTTGACCCTACCTGGAAGAATAGTGGAAGACGGAAGAGAAAAAGCCTCATTTGATGTTGACAAAGGCGTTTTCTCCCTCCGTGTCCCAAAGGAGACCCCAGGCCAGCACTTTGAAGGGCTCCAAATGTTGACCAGTCTTTTAGCCCCCAAGGGATCCAGATCAGCCAAACCCCTAGTGGAGGACGTGGGAGCCTATAGTGGGCATGTGGATGATGAGtatgaggggcaggaggaggaggaagaggagggagctTTTGACTGGCAGGTCGATCAGCAGGTGTACAGAGAGGACTCGGAGGAAGAAATGAACGCTCTCCAGAAATACGGCTTCGGGAATCTGAGATCGGGCGTCTTCACCAGACTGCAGGATGAACTGGGCGATGTCATCGACGTGAAGGCGCCCGACAGCGTCGCGGCCGCAGAGAGGAGGCGGGGCCGTCTTGCCGCGGAGAGTGCAAAGTTTGACCCAGATCATTATCTTGCTGACCTGTTTGAAGACGACGCAGTCCAGAGCCTGCTGAAGTTCCGTCCGTGGTGGCGCGAATCGAGCCCGGACCCAGGTTTGACCTTCTCAGAAGAGGAGAAGGATCAGCTGAGGAAGTTCACCAACCGGTCGTACCTGCTGGACAGGAAGTCCCGCCTCCACACCTGGCTCGGCCTGCTGGACATCGTCCTGGCGTACACGTATGAATTGCGCACCACCGAGGGCGAGCACAATGTGGAATCTTCGTGGAACATCAGGAAACTGAGTGGAACACCTCTGCTGGTTGGAGAGACATCTGCGAGCTGGGCAGGGAAGACCTTAAGCGGGGAGGAAGGCGAACGCTTCCAAACCTACAGCTCTGTACGGGAGGTCCTGGTGTCTTTTGGAAGAAGGGTTTTATGCTACCCGCTGCACAGGCACTTCGGGCTGGTCACCGCCGCCGTCAAAGATGCCGCGCTTATTTTCCAATCGGGGAAGGCTTGTGTCCTGAAGTGCCTGTTAGATATTCACAAAATCTTCAGGGAGAATGATCCTGCCTACATCCTGAATGATCTCTACATCACCGACTACTGCGTTTGGATCCAAAGAGTCAAGACGGGGAAAGTGACGGCGCTGGCTGAGCCCGTGCGGAAGGCGTCCCTCCGGAAGTCTGACCTGGGGCTGCAGCTGCAGGAGCTGGAGGCGGCCGCAGCgctggtggtggaggaggaggaggaggaggaggaggaggaggaagaggcggGCCTGAGGAGAGGCGGGGGAGCTCGGTGCTCCCACAGCAGGGAGGAATCCTCCAGCAGCAGTGATTCTGAGGAGAGCCAGGACTcgggggcagaggggcagggaGGAGCCGAGCCCGCAGCCGGCAGTCCCCCGGGCcaggcccccgcccccgcccccgctccGGAGGCCCGCCCTCCCGCTCACGCCGGCCCCGCGCGGCTGATCCAGGAGCTGGGGGAGAGAGTGGAGGCGGGGCTGAGGATCTCCGAGCCGCCTGAGGGCGTGCATTCCGGGAGCGGCGGAGAGAGGGCGAGCggcaggggagagagagcgagcggcgggagagtgagagagagcggcGTCGCTCCTCAGAGTACCGCAGTGCAGGCACACGCGCACGCCGCCCCTTCAAGGACTTTCTTAGAGGTGTGTCCTCGGAAAAACCCGCTGCTGATAGTGCCGACCCCCGAGCGCGACGGCGATGACGGGGACGGTAATTTGGATTGA

Transcript

SKAU_T00177770

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF04925	SHQ1	SHQ1 protein, Shq1 domain	Domain	Interproscan
PF21413	SHQ1-like_CS	SHQ1-like, CS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR007009	Domain	Shq1, C-terminal domain	Interproscan
IPR007052	Domain	CS domain	Interproscan
IPR008978	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR039742	Family	Protein Shq1	Interproscan
IPR048696	Domain	SHQ1-like, CS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12967	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000493	Biological Process	box H/ACA snoRNP assembly	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-