Gene detail

Detailed information of SKAU_T00156190 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00156190	ENDONUCLEASE-RELATED	CM056380.1	25289531	25304297	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00156190

ATGGAGGTGCTCACTGAGGCCCATGCCGGCCATTTTGGAGCGAGACGGATGCAGGAGAAGATCGGGTCACGCTTCTACTGGCGTGGCATTACACAGGATACTCTGGACTGGGTCAGTACATGTATTGCCTGCCAGAAGTTTGAGAAGGTGAAGACTGAGGCACCAGAGTTGAAGCCCATCAAACCAGTTTCACCATGGTATATGATCGGTGTGGACCTCATTGGACCGTTCAAGGCCTCCAGCAAAGGGAATCGTTACTGTCTGACAGCAACGGATTTCTTCACAAAGTGGGTGGAAGCCATACCCATCAAGGAAAAGACGGCAGTGGCAACATCGCAGGCCTTGATGGACATGTTCTACACCCATGGTGCACCTGAGGTCGTCTTGACGGACCAGGGTCGCGAGTTCTGGAATAAGGTTAACCAGACCTTGTTCGAGAATTTTGGGGTCAAGCATCGCATCACGTCGGCATACCATCCCCAGACGAATGGACTGGATGAGCGGACCAACCAGACCCTGAAGAGGGCCATTGGCAAGACCCTTGATGGACACCAAGAGAGGTGGGAGGACAAACTTAAAGAGATTGTGTTTGCCCATAACTCTTGTGTCCATGCCTCCACTAGGTACTCGCCCTATCGCCTGATGTATGGACGGGAGCCACGGCTGTTGTCAGAGattaCGGGAGATCTTCCTGAGGTGGAAGTTGCCGATCCTGATGCGGATGATGTGGAGAAGTACATTCAGGCAAGGGCTGAGAAAGACGGAGAGACTTTTGACAAGGTGAGAGCCAATGTCGCAAAGGCCCAGGGGAGACAAAAGGAGGCCTACCAGAGGAGGACAAAAAAGGGGACCAAGCGCTTCAACATCTCCCCAGGCATGGAGGTCCTGAAGAAGGACGAGCGGAAGCGTGGAAGGCCAGGGCGCACGATGGATCCTGATTGGCCAACCAAGTACAGGGTAACTGAGGTTGGGGACAACAACCTGGTGCAGCTGGAGACCATGGATGGGAAGCCACTGAGAACAAAAACACCCTATGCTTCAGTGAAGCCTCTACGTATGACTGAGTCAGCGCATTCAGATGACCCAGAAATGCTCTGCTCTAGGTCGGAGGAGGATGCATTGGAGGCCTGTGCGGCTTTGCTGAACAGACGGGTGGAGGACTTCAGGGCCATGGTTCTCGGCCAGCACACCTGGTTGGACGACAAGGTCATCGACCACGCCCAGGCCCTTCTAAAGGCACAACATGCCAACATTGGAGGGCTCCACGCCACCACCTCCCTCGCCCTGCTGTCCACCGTACCTACACCAGCTCAGGGGTTTGTGCAGATTCTTAATGTCTCTGCAAACCACTGGGTAACAGTAAGTAACATTGGCTGTAAGGTAGGTACAGTTCATGTTTTTGATTCTCTCGGGCAGCATAAGACGGAGGATTTCATTGCGCAGGTCACCTGCCTTCTTGCCTTTCCAGGAAAGAGTGTCCAGCTGCAGTGGCCTGATGTCCAACAGCAGGCAGGTGTCTCAGATTGTGGACTGTTTGCTATCGCAAACAGTCTCACTCTCTGCAGAGGTGAGGATCCCTCCATGGTCGACTACCATCAGGCAGCCATGCGGACTCACCTGTTTGCCTCTTTTCAGGCTGGGATTCTAACACCATTCCCCAGTACTGCGAGGGGCCCCACAGCCAAGGCAGTCCACGCCATTGAGGTGGACGTACACTGCCTCTGCAGACGAACCATCCGGTTTGTCATTCACTCCCTTGTAGGTACCTACACTGCAGTGAATACTGATGAGCTCACCTGTGTTCTGTGGCTTGATGGTGAAGCAGTCAACTCCTGCAGTAGCAATGGCATGGTCAGCGTGGCCCATAGAAATTGGACACATGAAGGGCACGGCTATTATCTATGGAAGTATATAAAACATGCTAATATGGGGCAATGGGACATAGGCAGAGCTGGCATCTTAAAATATCACACAGGACTTACCATGTCTGGTGTTGCTGTTCTGCAGGGGAGATTTGGCTGTGAGATCGAGCTCAACGCTGACTCTGGTGTAAGAGTTACGAGGACCTTTGCTCAGTATGGATGGAACGGAGAAGACTTCCTCTCCTTCAACCTCACTGGGAAACAATGGGTGGCTTCAGCAGAATCAGCTGTCTTCATTATACAGATGTGGAACAGGGACCAGGCTATCACCATGGAAACtaagaagtacatagagcagaccTGTGTGAGTCATCTGCTGCAGAGTGTGTTCTTTGAAGCAAAGGAGAGCCATAATACACCTCTGCCCTCACCTGAAGTATTTGTGAAGAGATCCTCGCACACTGGGAAGACCGAATGGGAATGGGACCTATCAGCTGAGAAAGAGTTTGAACATCACAAGCAGCACTGTGGCATCCTATATCTGTGA

Transcript

SKAU_T00156190

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00129	MHC_I	Class I Histocompatibility antigen, domains alpha 1 and 2	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR011161	Domain	MHC class I-like antigen recognition-like	Interproscan
IPR011162	Homologous_superfamily	MHC classes I/II-like antigen recognition protein	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR037055	Homologous_superfamily	MHC class I-like antigen recognition-like superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-