Gene detail

Detailed information of SKAU_T00119620 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00119620	PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL	CM056379.1	12645886	12675726	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00119620

ATGCATGGAAAGCACAGAATGATCTCTGTTAGCTTTAAAGCAAGGGGCACGCTTGCGGGCGGGGCAGGCTTTTTACCGCCCTCTCTCTGTCACATCCGCCATCGGGCCTCGGCCCGTACCGCGAGGAGCCCTCCGGAACGGCGGCCAGCTGGATTTAAACTATGGGGGAGCGCTCCAGCAGGGGCCCTCTCTGCTAAAGTTATCACCCAGGGGCCGCTCTCCCAGCTAAAGCGTCCACACATCTgggcGCTGCTTTTGGGGGCGTTCCTGTACAGCTGGCAGTTCCCCCACTTCAACGCGCTGAGCTGGAACCTGCGTGAGGACTACTCGCGGGGCGGCTACCGCATGATGTCTGTCACCCACCCGGCGCTGTGCAGGAGGGTGGCTCTGCGCCACAGCCTGGCCCTGATTGGCCTGTCGGCCCTGGGCCCCGCCCTGGATCTCACCACCTGGACCTTCCCGCTGGTGTCGCTGCCCATCAACCTGTACATCAGCTACCTGGCCGTCCGCTTCTACAGGGAGGCGGACCGCGCCAGCGCCCGGAACCTCTTCTTCTGCAGCCCCGGAAGGAGCCGGACGGCCCCGCCCCTGCActccccggccccgcccccacgctccccggccccgcccccacaCTCCCCGGCCCCGCCCTGCAGAGCTAACGCTCCGCCCACAGCTCACCCAATTGAATATCAGAATCTGGGATCTGGGTACCCACCGCAGGGGTCTGTGAGCGCGCCCCGCTCACAACGACCTCCGTTCCGTCCCGGGACGGCCGTGCCGTCGGACTCCTCGCCCTCCTCTCGAAAATCCCGAcATTCAAAATGGATCCGCTTTCCTGGAGTGTACAAGCGCAATGAGTCGAGGCGGACCGGACTGGTACGGACCACAGGGTCATTTGTGACGGAACTGCGGGAGATGTTCGAACATCTGCCCGACTCTTTCAGCGACTTCCACGCGCTCAGGCGGCGATTTTTGCTAGTGGACACTTATCGGGGAAAAGAGACGGAGTCCGCTGGTAAAAGGACAGCGAGTGGCAGGGCAGAGCTCATGTCCAAGCTTCTGCCCCGAACCCAAAACTGGGTGGATTTAGAATCCGACTACGATGAACCTTCCGTCAGGACGGCTTCTAGAGACTTGCTAAATAACGAAATTGAAGTGGACAGAACCGAGGACTGGGACGAAATTAGGGGCGAGCCGAGATCCCCAGAGCCAAGTGCCATGTCAAGTTTCTCCAATGGATCGGGCAGTAAGAAGCTGCCCCAGGCGATCATCATCGGGGTGAAGAAGGGAGGTACGCGCGCGCTGCTCGAGTTCCTCCGCGTGCATCCCGACATCAGGGCCGTGGGAGCCGAACCGCACTTCTTCGACAGGAACTACGACAACGGACTGGATTGGTACAGGGGCTCGAGCAGTAATACTGGAGCTTGCACGAGAGAAACGCTCGCGCGGAGAGATCGCTCGGAACCGTCCCGAGTGGAAATTCTGAAGGGGCGCATCGCCGTAGAGGCAGCTGGCTCTAGGGGCTCTCCCGTTTggcgcccccccgccccccgcccacaccccaccccaaacaaccccaccccaccccgacgCTCGAAGCGGGACGCCAACTCCTTTGAGGGCCTCTTGACTAAAGATCAAAATGGGCAGAACTCACGACTGACCAAGAACAACGGAAGCACTTGTTGGGAGAGAGACGGCTCGGCGGGATCGCTCATCTTCGCGCTCCCGCTCGAACCTCGGACCGAAAGGCTCGGCGCGCGCCGTGACACGGGGTCCCTAAGCTTCGTCAGGATTGGGGCGTTCCGATCAGCCGAGAGGAAGGGGAACAGGGTGTCGTttaatcccaccccccaccctcctgACGCTCCGCAGGAGTTAGCCGTCTGGCTGCCCGACGgggaggggagaggagaggagaggaaaataGGAGGAGAGGAGCGGTGGAGGAGCAGGAAAGAGGAGGTGTCGGCCGAAAATCTGTACTATAATGCTGTCCCCACTGCAATATCAAGCTCTTCAAAGGAGACCGCTCCCTCCCTCCAAAAAAGCATCCACCTGTTCCTCTGCCCCGTGACCCATAGAGTGACCCTCGCCGCCTACAGCAGCTCTCCGGTTAAACACAATGTAACTGTCTCAGCACTGTGGGGATTGGGTGTCAAACGTCTGGCTTTGGTGTCTCAGCAAGGGTTTTCAAGTGAGGGTTCAATGGGCCAGGATAGGCCTGCTGTCATAAGCAGTTATCTACTGGTGTTCTGA

Transcript

SKAU_T00119620

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00685	Sulfotransfer_1	Sulfotransferase domain	Domain	Interproscan
PF01040	UbiA	UbiA prenyltransferase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000537	Family	UbiA prenyltransferase family	Interproscan
IPR000863	Domain	Sulfotransferase domain	Interproscan
IPR006369	Family	Protohaem IX farnesyltransferase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43448	PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006783	Biological Process	heme biosynthetic process	Interproscan
GO:0006784	Biological Process	heme A biosynthetic process	Interproscan
GO:0008146	Molecular Function	sulfotransferase activity	Interproscan
GO:0008495	Molecular Function	protoheme IX farnesyltransferase activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016765	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-