Gene detail

Detailed information of SKAU_T00119140 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00119140	RFX TRANSCRIPTION FACTOR FAMILY	CM056379.1	11822109	11837604	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00119140

ATGTACTACCATAACTGGTTTTACAGCCCGGCGGGTGAATATCAGGGTTCCCTGCACTCCAATGACTCTGTGTCGGACTCCAGCCCCCCTCCGGCGGGGGTTCAGACGGGGGTCCCCACTCAGGTAGTCCAGCAGGTGCAGACGGCCCAGCAGAGATCGGTGGTGCAGGCCGTGTCCCAGCCAGCCAAGACCGGACAGAGCGCCCAGCTTACTGTTACCAACCTGCAGCCTGTTCATCTGAGTCAGgaggtgCAGCTGCAGCAGGTGCCAGTGCAGCATGTGTACTCCAGCCAGGTGCAGTACGTGGAGGGTGGAGATGCCAACTACACCACCAGCACCATACGCTCTGGCAGCTACACTTACTCAGACAGCCCTCTCTACACCCAGACGGCCTCCGGCTCTTACTACGAGTCCACGCCCGCCTCAGGGGTCACAGGTCACGACGCCCGTCACCTCCCAGACCGTGTCGGTCACTGCGGGAGGGGCGGCCGTCTCCATGTTCTTGTCCGGGGCGGGGCAGATTGTGGCCAACACCACCTCGGGCACCAGCGGCGGGGGGCACGGTGGTGGCGTGCACCGCCCCCTCTATGGCTCCGGCGGGCGGGGGCCagcggcgggggcggggggcagcTACGTCATCCAGGGGGGCTACATGCTGGGGGGCAGCAACGCCAACCAGAGCTACTCGCACAACACCCCGCGCCTCACCGGCGACTGTGCAGTGGCTGCTGGATAACTACGAGACAGCGGAGGGGACCCCGTCGGCTGGGCACGCGGGGGAACTCAAAGTACCATTACTACGGCCTGAGGATCAAGGCCAGCTCCTCCCTGCTCAGACTTATGGAGGACCAGCAGCACCTGGCCATGAGACAGCAGCCTTTTTCACAGAAACAGAGGTTAAAGCCTGTGCAGAAAGTGCAGCAGTACCAGCAGTTtctggACGCCTCTCGCACCCTGCCAGAGTTCCCCGAGATCGACCTCCAGGGCAAAGCACTGCCTGATGGGATACTGATGGACCACATCAAGGGCTTTCAGGTGCTCTACCGGGAACACTGCGAGGCCATCCTGGACGTGACGATAAACCTGCAGTTCACGCTGGTGGAGACGCTGTGGAAATCCTTCTGGAGATTCAGCGAGGGCCAACCCGGCGAGTCCGACTCGCTCGGCGTCCACGACGAGTCGGAGAAGCGACTGCCAAAGTCCTGCCTGGTGGTGCTGTGTAAGTACGATCCGGTGGTGCGCTGGAGCAGAGACTGCGACAACACGCTGTACCAGGGCCTGGTGGAGATCCTCATCCCCGACGTGCTCCGGCCCATCCCCAGTGCCTTAACTCAAGCCATCCGCAACTTCGCCAAGAGCCTGGAGAGCTGGCTGACCAACGCCTTGATGAACATTCCCGAGGAGATGGTCCGCATCAAGGTGACCTCAGCCAACGCGTTTGCGCAGACGCTGCGCAGGTACACCTCCCTTAACCACCTGGCCCAGGCGGCGCGCGCGGTCCTGCAGAACACGGCGCAGATCAGCCAGATGCTGAGCGACCTCAACCGCGTCGACTTCGCCAACGTGCAGGAGCAGGCCTCGTGGGTGTGCCGCTGTGAGGACCGGGTGGTGCAGCAGTTAGAGCAGGACTTCAAGCTGACGCTGCAGCAGCAGAACTCTCTGGAGCAGTGGGCCGCCTGGCTGGAGGGCGTGGTCTCCCAGGTCCTGAAGCCCTACCAGGCCAGCTCCGCCTTCCCCAAAGCCGCCAAGCTCTTCCTGCTCAAGTGGTCCTTCTACAGCTCCATGGTGATCCGAGACCTGACCCTCCGCAGTGCTGCTAGTTTCGGCTCCTTCCACCTGATCCGACTGCTGTACGACGAGTACATGTACTACCTGATAGAGCACCGCGTGGCGCAAGCCAAGGGGGAGACCCCCATCGCTGTCATGGGAGAGttTGCCAGCCTGGGACGGAGCCTGAACAGTCTGGATCCTGATAAAGaagaggaagaggaggaggaagaggagagtgaAGATGAGTGCCAGGAGCTGTCTCTCCCGTCGGACCCCACCGGCCTGGGGGAGGAGTCACTGGAGCCGCCCGCCAAGCTGGCGAGGACTGACACACGGGCACTATTCAGCATGGCGCACGGGGATAACTGA

Transcript

SKAU_T00119140

CTGCCTTGACCGTTTAATTCATGCAGGTGGGTCTTGATGTCCTTCATTTGCTTGTGAGGATCGGATTATGATTATCTGCCTTTGTTCTCATCAAAGGACacaggcattgtgtgtgtgtgtattatttttttaaaggacacGCCGATTAACATCAAACTGGTTTtcacttgactttttttttttttttccacacaacaAGCAATTGCATACCTTGTTTTTGCTTCATGACTAAATAACCATGAGAGGGCACCTATACGGCTCGGTGTTTGTTGCTCTTAGTGTGAAATATGAGGCGGACTTCAAAATTAAATGGCAAAATCCTCTTGAGCGAGAAGAAGTGTGGTGAACCTGCATGTACCAGTTGACTCTGGTGTCACATTTCTGGGGGAGCGAGAGAACTGAGAGTCAGGGCTTTAACTTTTTTAGGAAAAGAAATACAAGTAGCTCacgttatgatttttttttaaaaagtcaatcCACTGCAGAATATATTTAATGAATTACTGCGTTATTGCCTCCAGCCCTGCTGTCTGTTTCCAAAGACGCTACCCCTAATGAGGTGTGCAGTTATGAAATTCCTGTTCTCTTGTCGTACAAAAGCATTATGTTTTGGTCTGATGATACTTGTGTTTATCGAATGGGGGGATTTTTTATTCCATCCACTGAGATTAGCTGTCCAAGGCTACCATCACTCTGTATAATATAAGATtagaaagggagagacagagtTGAGTGGAGTGTCCGAGtaccatctctctgtctctctctctggccgACTCTATTTCTCCATCAATGACTGTGTACTGGCTGTCCTGACGACCATGTACTACCATAACTGGTTTTACAGCCCGGCGGGTGAATATCAGGGTTCCCTGCACTCCAATGACTCTGTGTCGGACTCCAGCCCCCCTCCGGCGGGGGTTCAGACGGGGGTCCCCACTCAGGTAGTCCAGCAGGTGCAGACGGCCCAGCAGAGATCGGTGGTGCAGGCCGTGTCCCAGCCAGCCAAGACCGGACAGAGCGCCCAGCTTACTGTTACCAACCTGCAGCCTGTTCATCTGAGTCAGgaggtgCAGCTGCAGCAGGTGCCAGTGCAGCATGTGTACTCCAGCCAGGTGCAGTACGTGGAGGGTGGAGATGCCAACTACACCACCAGCACCATACGCTCTGGCAGCTACACTTACTCAGACAGCCCTCTCTACACCCAGACGGCCTCCGGCTCTTACTACGAGTCCACGCCCGCCTCAGGGGTCACAGGTCACGACGCCCGTCACCTCCCAGACCGTGTCGGTCACTGCGGGAGGGGCGGCCGTCTCCATGTTCTTGTCCGGGGCGGGGCAGATTGTGGCCAACACCACCTCGGGCACCAGCGGCGGGGGGCACGGTGGTGGCGTGCACCGCCCCCTCTATGGCTCCGGCGGGCGGGGGCCagcggcgggggcggggggcagcTACGTCATCCAGGGGGGCTACATGCTGGGGGGCAGCAACGCCAACCAGAGCTACTCGCACAACACCCCGCGCCTCACCGGCGACTGTGCAGTGGCTGCTGGATAACTACGAGACAGCGGAGGGGACCCCGTCGGCTGGGCACGCGGGGGAACTCAAAGTACCATTACTACGGCCTGAGGATCAAGGCCAGCTCCTCCCTGCTCAGACTTATGGAGGACCAGCAGCACCTGGCCATGAGACAGCAGCCTTTTTCACAGAAACAGAGGTTAAAGCCTGTGCAGAAAGTGCAGCAGTACCAGCAGTTtctggACGCCTCTCGCACCCTGCCAGAGTTCCCCGAGATCGACCTCCAGGGCAAAGCACTGCCTGATGGGATACTGATGGACCACATCAAGGGCTTTCAGGTGCTCTACCGGGAACACTGCGAGGCCATCCTGGACGTGACGATAAACCTGCAGTTCACGCTGGTGGAGACGCTGTGGAAATCCTTCTGGAGATTCAGCGAGGGCCAACCCGGCGAGTCCGACTCGCTCGGCGTCCACGACGAGTCGGAGAAGCGACTGCCAAAGTCCTGCCTGGTGGTGCTGTGTAAGTACGATCCGGTGGTGCGCTGGAGCAGAGACTGCGACAACACGCTGTACCAGGGCCTGGTGGAGATCCTCATCCCCGACGTGCTCCGGCCCATCCCCAGTGCCTTAACTCAAGCCATCCGCAACTTCGCCAAGAGCCTGGAGAGCTGGCTGACCAACGCCTTGATGAACATTCCCGAGGAGATGGTCCGCATCAAGGTGACCTCAGCCAACGCGTTTGCGCAGACGCTGCGCAGGTACACCTCCCTTAACCACCTGGCCCAGGCGGCGCGCGCGGTCCTGCAGAACACGGCGCAGATCAGCCAGATGCTGAGCGACCTCAACCGCGTCGACTTCGCCAACGTGCAGGAGCAGGCCTCGTGGGTGTGCCGCTGTGAGGACCGGGTGGTGCAGCAGTTAGAGCAGGACTTCAAGCTGACGCTGCAGCAGCAGAACTCTCTGGAGCAGTGGGCCGCCTGGCTGGAGGGCGTGGTCTCCCAGGTCCTGAAGCCCTACCAGGCCAGCTCCGCCTTCCCCAAAGCCGCCAAGCTCTTCCTGCTCAAGTGGTCCTTCTACAGCTCCATGGTGATCCGAGACCTGACCCTCCGCAGTGCTGCTAGTTTCGGCTCCTTCCACCTGATCCGACTGCTGTACGACGAGTACATGTACTACCTGATAGAGCACCGCGTGGCGCAAGCCAAGGGGGAGACCCCCATCGCTGTCATGGGAGAGttTGCCAGCCTGGGACGGAGCCTGAACAGTCTGGATCCTGATAAAGaagaggaagaggaggaggaagaggagagtgaAGATGAGTGCCAGGAGCTGTCTCTCCCGTCGGACCCCACCGGCCTGGGGGAGGAGTCACTGGAGCCGCCCGCCAAGCTGGCGAGGACTGACACACGGGCACTATTCAGCATGGCGCACGGGGATAACTGATGccactcgctcgctctctcgctcgctcacgccaacgcgcacacacaggcttacacacacgtgtgcacacagcCAACTGGTCCGTGGGCATCATTCATGGTTCATCATGGTTCTAGCCGGgttacacgcatacacacacacacacacacacacacacacacacacgagtctgACCGTTTTCTTGCCCATTGCTGTCCACTGAGCTGGAGCAGTCTGAAGGAGCTAGCTGTCTGTATGCGGCGTGTTAGCCTGTGTCTGGTGAGCtgagatt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04589	RFX1_trans_act	RFX1 transcription activation region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007668	Domain	RFX1 transcription activation region	Interproscan
IPR039779	Family	RFX-like DNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12619	RFX TRANSCRIPTION FACTOR FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-