Gene detail

Detailed information of SKAU_T00114460 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00114460	E3 UBIQUITIN-PROTEIN LIGASE SIAH2	CM056378.1	125933060	125943126	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00114460

ATGTTAGAGTTATCTGGCACAGACGTGTTGCAGAACTTGGCGTTAAACGGAGAGGGCCCTGTGTTTCCAGAGAAGAAGAAAGCCTTCAGTGGAAATCATATGGACGAAGAAATGAGTCGCCAGACCGCTGCAGCGCTGCCCACCGGAACCTCCAAGTGCGCCCCCTCCCAGCGAGTCCCCGGCGCTGTCGGGCACCACGGCCCTCCAACAGCGACCTGGCCAGCCTGTTCGAGTGCCCCGTGTGCTTCGACTATGTGCTGCCCCCTATCCTGCAGTGCCAGAGCGGCCACCTGGTGTGCAGCAACTGCCGGCCCAAGCTCACCTGCCTGCCCCACCTGCCGCGGGCCCCTGGGCTCCATCCGCAACCTGGCCATGGAGAAGGTGGCCAACTCGGTGCTGTTCCCCTGCAAGTACGGCCTCGTCGGGCTGCGAGGTGACGCTGCCGCACACCGAGAAGGCGGAGCACGAGGAGCTGTGCGAGTTCCGGCCGTactcctgccccctgcccccggGGCGTCCTGCAAGTGGCAGGGCTCGCTGGAACGCCGTCATGCCCCACCTCATGCACCAGCACAAGTCCATCACCACGCTGCAGGGCGAGGACACATCGTCTTCCTGGCCACGGACATCAACCTGCCGGGGGCGGTGGACTGGGTGATGATGCAGTCCTGCTTCGGCTTCCACTTCATGCTGGTGCTGGAGAAGCAGGAGAAGTACGACGGGCACCAGCAGTTTCTTCGCCATCGTGCAGCTCATCGGCACAACACGCAAGCAGGCTGAGAACTTCGCCTACCCGCCCTGGAGCTCAACGGGCACCGGCGCCGGCTCACCTGGGAGGCCACGCCCCGCTCCATCCACGAGGGCATCGCCACGGCGATCATGAACAGCGACTGCCTGGTGTTCGACACGTCCATCGCGCAGCTGTTTGCCGAGAACGGCAACCTGGGCATCAACGTCACCCATCTCCATGTGCTGAGGGAGGGCGATGGGTGGGCGgactttgacttgacttgactgacAGGTGGAcatgcacatatgtatacacactgcCAGCGCACACCACACCACGTACACGTGTGCTGAGGGGTTACCTTGGACTCTAATccgttaaaaaaataaagatctcACCCAGGGAACTTTGCATTTGTCTGACGTATCAAGCGTTTGCTAGCTTTCTAGCACAGATTATCTGCgctaaccagatggtcagctcctgtGTTTCTTCCATCCCCTCTACTTCCTTGTGCCAGGAGGTTCCTGTTGGTAAGCAGTAACAGTGTTGGTTTATGAATATGCATGGGGGCGTGCTCAACGACCGAGCCACCGTTCACAAGGCAGAAAATTGGAGTGCTTTTCTTCCAAAAGAGGTCACAAACGCAGAGCTCGATGTCTGGTTAGCCTGTTGAATCTGTGTGCCTAGCTGCGTGCTTGGTACGTCCAACAAACCGTTTCCCTTGAGTTTAATTTTCAGTAAATTAAATTTCAACCTCCAGCAAGATATATAGCTGTGTGAAATGATTATAGTACGGTTTAAGCatttatcgttttttttttttctttttctgaggAAACCCAAagatgctctcacacacacggaaCGGACACTCACGTGTGTGTGCACAGTAGGGCAAGGGCTTTcagttaattttattattatagtTATAATAACTATTATAATATTTGAATACTCATTGTTTTAGCTGGGAGATGCTGGAGGGATTCTATGGTGGTGTCAGAGGATGACCGTAAAAtatgggcgggcggggggggggagggggttcctcaaaaaaaaaaaagcatttcaacGTAAAGTGAAACACTAACTTTTATGAAAGTtccgtttattattattttttgtttttatttttgatttattattGGTTGTTCTCACGTGTCATCCCCTACCCCACCACCCGTGAGGTCCTGCAACTTGAATTATGATTGGCGGCTGAGATGAGGGGTCTTCTGTAGTCCCAACAATTTCTGCTTAAACCACTCGATACCTGCCCAAGAATGGGGGCCATTTAtattgtaatattattattattattattattattattattattattattattatcattcatactgttattatgattataattttttttgtaatgcGTTTTAAGAAAAAGGAAACAGAAGCTGTTGTAAAGTTGTGGCTGATCTTCAGTGTTTGTAGATTGTAATGTTCTTCGCACTGTTGTTACAcgtccttggttttctttccgtgtttttgttttcattttctcttCCCTCATTTGTCAGTTTCGAGGTGGAGGGCAAGCGGACCAAAGCACCTGCCTCGAGTGAGTGCCGCTGGttcctgtctctcgctctctgtatGACTAGGCCTTGTCATTTTAGTTTTTTcgttcctttatttttattttgccattAAATAAATCTATCTTTTTCATACCTCTTGCCTCTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR004162	Family	E3 ubiquitin-protein ligase SINA-like, animal	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45877	E3 UBIQUITIN-PROTEIN LIGASE SIAH2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-