Detailed information of SKAU_T00111210 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00111210ATAXIA TELANGIECTASIA MUTATED ATM -RELATEDCM056378.1116620473116822617-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00454PI3_PI4_kinasePhosphatidylinositol 3- and 4-kinaseFamilyInterproscan
PF00569ZZZinc finger, ZZ typeDomainInterproscan
PF00570HRDCHRDC domainDomainInterproscan
PF01564Spermine_synthSpermine/spermidine synthase domainDomainInterproscan
PF01612DNA_pol_A_exo13'-5' exonucleaseDomainInterproscan
PF02259FATFAT domainRepeatInterproscan
PF02260FATCFATC domainFamilyInterproscan
PF03002SomatostatinSomatostatin/Cortistatin familyFamilyInterproscan
PF06701MIB_HERC2Mib_herc2DomainInterproscan
PF08066PMC2NTPMC2NT (NUC016) domainDomainInterproscan
PF08771FRB_domFKBP12-rapamycin binding domain DomainInterproscan
PF11865DUF3385Domain of unknown function (DUF3385)RepeatInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF18346SH3_15Mind bomb SH3 repeat domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000403DomainPhosphatidylinositol 3-/4-kinase, catalytic domainInterproscan
IPR000433DomainZinc finger, ZZ-typeInterproscan
IPR001045FamilySpermidine/spermine synthasesInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR002121DomainHRDC domainInterproscan
IPR002562Domain3'-5' exonuclease domainInterproscan
IPR003151DomainPIK-related kinase, FATInterproscan
IPR003152DomainFATC domainInterproscan
IPR009076DomainFKBP12-rapamycin binding domainInterproscan
IPR010606DomainMib-herc2Interproscan
IPR010997Homologous_superfamilyHRDC-like superfamilyInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR012588DomainExosome-associated factor Rrp6, N-terminalInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR014009DomainPIK-related kinaseInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR018142DomainSomatostatin/Cortistatin, C-terminalInterproscan
IPR018936Conserved_sitePhosphatidylinositol 3/4-kinase, conserved siteInterproscan
IPR024585DomainSerine/threonine-protein kinase mTOR domainInterproscan
IPR026683DomainSerine/threonine-protein kinase TOR, catalytic domainInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR030373Conserved_sitePolyamine biosynthesis domain, conserved siteInterproscan
IPR030374DomainPolyamine biosynthesis domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR036738Homologous_superfamilyFKBP12-rapamycin binding domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR036940Homologous_superfamilyPhosphatidylinositol 3-/4-kinase, catalytic domain superfamilyInterproscan
IPR037252Homologous_superfamilyMib/herc2 domain superfamilyInterproscan
IPR040847DomainMind bomb, SH3 repeat domainInterproscan
IPR042056DomainE3 ubiquitin-protein ligase MIB1/2, zinc finger, ZZ-typeInterproscan
IPR043145Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan
IPR044876Homologous_superfamilyHRDC domain superfamilyInterproscan
IPR049559DomainRrp6-like, 3'-5' exonuclease domainInterproscan
IPR050517FamilyDNA Damage Response and Repair KinaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11139ATAXIA TELANGIECTASIA MUTATED ATM -RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005179Molecular Functionhormone activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0008408Molecular Function3'-5' exonuclease activityInterproscan
GO:0016242Biological Processnegative regulation of macroautophagyInterproscan
GO:0016301Molecular Functionkinase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0031929Biological ProcessTOR signalingInterproscan
GO:0031931Cellular ComponentTORC1 complexInterproscan
GO:0031932Cellular ComponentTORC2 complexInterproscan
GO:0044237Biological Processobsolete cellular metabolic processInterproscan
GO:0044877Molecular Functionprotein-containing complex bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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