Gene detail

Detailed information of SKAU_T00107100 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00107100	MRNA EXPORT FACTOR AND BUB3	CM056378.1	105834577	105853515	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00107100

ATGTCTGAGAAGTTTGTCGAAGTCGACAGGCTTCGAGCCAACCTGCAAAAGTACCGTTCAGGCGAATTATTTCAACAAGTCGCAGAGATAAccagtcaGGACGTCCTATGGCGCATCGAAAAGGTTATTCTGGAAATAATAACAAGTCTGACGAAAGAGGAGGCGCCGGTGTTGGTCTTTCATAACAGATCGAGTTGGGCTAACGTAAGGTTTGACAGTGCTGTTGGTCTTCACATGGGGCCAGACAGCAATACTGTCAACACCATCAGAAGTgactgctcttcatctgttaacAGATTTGCATTGACCCTGAAGGTCCTGTCTGCAGTCTATAAACTTGTGCAAAGCGACACATATGCTACGAAACGGGACATCTATTACAACCATGCACAGCTGTTTGGGACTCAGAGGACTGTGGATTCCATTGTAGATGACATTTCCTGTATGCTCAAGGTCCCTCGCAGGAGCCTtcacgtgCTCGCAACGTCTAAGGGATTCCTCTCTGGTGATCTTAGCTACATGGAGGAAGACGGCACAAAAGTGAACTGCTGCTCCGGAACCACTGTGAGTGAATTAGACGCACAGGCTATGTCAGTTTCCTCTAATGTCTGTGGAATAAAGAATATTTCCTCACGTGCAAAGTTTGTTTTAATTGTGGAAAAAGACGCAACTTTCCAGAGGCTCCTGGACGACGGGTTCTGTAGCAGACTGGCTCCGTGTATCATAATCACAGGGAAGGGTGTCCCAGATGTGAACAGCAGGTTGATGGTGAGGAAGCTGTGGGATACCCTGCACATTCCCATCTTCGCTTTGGTGGACGCCGACCCGCATGGCATTGAAATAATGTGTATCTACAAGTATGGATCCGTGTCCATGTCCTTTGAAGCTCAGAATCTCACCGTCCCAAGCGTGATGTGGCTGGGCCTTCTCCCGTCTGACATTGAGAGACTCAGGGTTCCAAAGGATGTCCTGATTCCATTTACAAAGAGGGACGAGAGCAAACTCACAAGCCTGCTAAAGCGGCCGTATATCGTCTATCAGCCTGCATGGGAAAAGGAGATGGAGAAGATGCTGAAGTGGAGACAGAAAGCTGAAATACAATCCCTGACATCATTAGCCCCAGACTTCCTCACCATCCAGCAGAACATAAATATTCACGGATCTGCAATGAGCTTGTTTGGTGCAAGTTCTGGTTTTGGAGCTGGAGGTAGCAGTGTATTTGGCAGTGCAACGACGGATAGCCACAATCCCATGAAGGATGTTGAGGTGACGTCCCCTCCTGATGACAGTATCAGCTGCCTGGCCTTCAGTCCCCCAGCCATGCCGGGAAACTTTCTCATTGGTGGCTCCTGGGCCAATGATGTGCGATGCTGGGAAGTGCAGGACAATGGGCAGACCGTCCCCAAGGCTCAGCAGATGCACACGGGCCCTGTTTTGGATGTCTGCTGGAGTGATGATGGGAGCAAGGTCTTCACTGCCTCCTGTGACAAAACGGCCAAAATGTGGGACCTTAACAGCAACCAGACAGTGCAGATAGCACAGCATGAAGCACCCATTAGAACTGTACACTGGATAAAAGCACCCAACTACAGTTGTGTCATGACAGGAAGCTGGGACAAAACTCTTAAGTTCTGGGACACGCGCTCCCCGAGCCCCATGATGTCCTTACAGCTGCCGGAGAGATGCTACTGCGCTGACGTGGTGTACCCCATGGCAGTGGTGGCTTCAGCCGAGCGCGGGCTAATCGTGTACCAGCTGGAGAACCAGCCCTCAGAGTTCCGCAGGATAGACTCCCCGCTCAAGCATCAGCACCGCTGTGTGGCCATCTTCAAGGACAAGCAGAATAAGCCCACTGGCTTTGCCCTAGGGAGCATCGAGGGACGGGTGGCCATACATTACATCAACCCCCCGAATCCAGCCAAGGACAACTTCACTTTCAAGTGCCATAGGTCCAACGGAACCAATACAGCAACCCCACAAGATATTTACGCTGTGAACGCTATCTCGTTTCACCCTGTCCACGGGACCCTGGCCACCGTGGGGTCGGACGGGCGCTTCAGCTTTTGGGACAAAGATGCTCGGACGAAGCTGAAGACTTCTGAGCAGCTCGACCAGCCCATCACTGCCTGCTGCTTCAACAACAACGGCAACATCTTCGCCTACGCCTCCAGCTATGACTGGTCAAAGACTGGCGGACTTAACAGGCACGTTCCCAAGGTCTTCCAATcccTGCGACCTTGCAGACTTGGTGTAATGATGACGAGCACTTCAACGTTACAGGACATGAGTACTACAACCCCCAGAAAAAGAACTACATCTTCCTGCGCAATGCGGCTGAGGAACTGA

Transcript

SKAU_T00107100

ATTTAAGTTAAACAGAACGTCCTGTCAAAAAGGCCACTCTTTTTGCTCAGTATTGAAAATCTGCTTGCTAGCTTGATAAGCCACATAGCTACAGCGAATGTCTGAGAAGTTTGTCGAAGTCGACAGGCTTCGAGCCAACCTGCAAAAGTACCGTTCAGGCGAATTATTTCAACAAGTCGCAGAGATAAccagtcaGGACGTCCTATGGCGCATCGAAAAGGTTATTCTGGAAATAATAACAAGTCTGACGAAAGAGGAGGCGCCGGTGTTGGTCTTTCATAACAGATCGAGTTGGGCTAACGTAAGGTTTGACAGTGCTGTTGGTCTTCACATGGGGCCAGACAGCAATACTGTCAACACCATCAGAAGTgactgctcttcatctgttaacAGATTTGCATTGACCCTGAAGGTCCTGTCTGCAGTCTATAAACTTGTGCAAAGCGACACATATGCTACGAAACGGGACATCTATTACAACCATGCACAGCTGTTTGGGACTCAGAGGACTGTGGATTCCATTGTAGATGACATTTCCTGTATGCTCAAGGTCCCTCGCAGGAGCCTtcacgtgCTCGCAACGTCTAAGGGATTCCTCTCTGGTGATCTTAGCTACATGGAGGAAGACGGCACAAAAGTGAACTGCTGCTCCGGAACCACTGTGAGTGAATTAGACGCACAGGCTATGTCAGTTTCCTCTAATGTCTGTGGAATAAAGAATATTTCCTCACGTGCAAAGTTTGTTTTAATTGTGGAAAAAGACGCAACTTTCCAGAGGCTCCTGGACGACGGGTTCTGTAGCAGACTGGCTCCGTGTATCATAATCACAGGGAAGGGTGTCCCAGATGTGAACAGCAGGTTGATGGTGAGGAAGCTGTGGGATACCCTGCACATTCCCATCTTCGCTTTGGTGGACGCCGACCCGCATGGCATTGAAATAATGTGTATCTACAAGTATGGATCCGTGTCCATGTCCTTTGAAGCTCAGAATCTCACCGTCCCAAGCGTGATGTGGCTGGGCCTTCTCCCGTCTGACATTGAGAGACTCAGGGTTCCAAAGGATGTCCTGATTCCATTTACAAAGAGGGACGAGAGCAAACTCACAAGCCTGCTAAAGCGGCCGTATATCGTCTATCAGCCTGCATGGGAAAAGGAGATGGAGAAGATGCTGAAGTGGAGACAGAAAGCTGAAATACAATCCCTGACATCATTAGCCCCAGACTTCCTCACCATCCAGCAGAACATAAATATTCACGGATCTGCAATGAGCTTGTTTGGTGCAAGTTCTGGTTTTGGAGCTGGAGGTAGCAGTGTATTTGGCAGTGCAACGACGGATAGCCACAATCCCATGAAGGATGTTGAGGTGACGTCCCCTCCTGATGACAGTATCAGCTGCCTGGCCTTCAGTCCCCCAGCCATGCCGGGAAACTTTCTCATTGGTGGCTCCTGGGCCAATGATGTGCGATGCTGGGAAGTGCAGGACAATGGGCAGACCGTCCCCAAGGCTCAGCAGATGCACACGGGCCCTGTTTTGGATGTCTGCTGGAGTGATGATGGGAGCAAGGTCTTCACTGCCTCCTGTGACAAAACGGCCAAAATGTGGGACCTTAACAGCAACCAGACAGTGCAGATAGCACAGCATGAAGCACCCATTAGAACTGTACACTGGATAAAAGCACCCAACTACAGTTGTGTCATGACAGGAAGCTGGGACAAAACTCTTAAGTTCTGGGACACGCGCTCCCCGAGCCCCATGATGTCCTTACAGCTGCCGGAGAGATGCTACTGCGCTGACGTGGTGTACCCCATGGCAGTGGTGGCTTCAGCCGAGCGCGGGCTAATCGTGTACCAGCTGGAGAACCAGCCCTCAGAGTTCCGCAGGATAGACTCCCCGCTCAAGCATCAGCACCGCTGTGTGGCCATCTTCAAGGACAAGCAGAATAAGCCCACTGGCTTTGCCCTAGGGAGCATCGAGGGACGGGTGGCCATACATTACATCAACCCCCCGAATCCAGCCAAGGACAACTTCACTTTCAAGTGCCATAGGTCCAACGGAACCAATACAGCAACCCCACAAGATATTTACGCTGTGAACGCTATCTCGTTTCACCCTGTCCACGGGACCCTGGCCACCGTGGGGTCGGACGGGCGCTTCAGCTTTTGGGACAAAGATGCTCGGACGAAGCTGAAGACTTCTGAGCAGCTCGACCAGCCCATCACTGCCTGCTGCTTCAACAACAACGGCAACATCTTCGCCTACGCCTCCAGCTATGACTGGTCAAAGACTGGCGGACTTAACAGGCACGTTCCCAAGGTCTTCCAATcccTGCGACCTTGCAGACTTGGTGTAATGATGACGAGCACTTCAACGTTACAGGACATGAGTACTACAACCCCCAGAAAAAGAACTACATCTTCCTGCGCAATGCGGCTGAGGAACTGAAACCGCGCAACAAGAAATGATTCTTGCAGCTGTGTCACATCTGTTCTGGGAAACCTGGGTTCGACAAGTGCGCGGAAGACCTGCCTTTTTATGTATATACTGCAGAGCTTCTTTTAACTCTCGCCAGGACCAATGGCGGGGGCGTTGCTTGTAAATGGACCAATCGGTAAAGGTCTTCAGTCCACTGGTTTTCCCCATTGGTGTGGCCTTTGGTCATATGAGGACCTGGAGAGTGGcggttattcttttttttatgtcTTAAAAgttatttgttgtttgttttttgcatCCAAAATAAATGACTTTAACTATGTTTCACTGCTACTATGTGCTGTAGTCCTATATATTcattgtgaaataaataaaagcaatggtTCTGTCCTGCAGGTTTCTCCCCCCCAAGGGCTTTATTCTGCATTTCTACCTTCTTTCCTAGCTGTAACTGGAGGAGAAAGCATATTA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04406	TP6A_N	Type IIB DNA topoisomerase	Domain	Interproscan
PF21180	TOP6A-Spo11_Toprim	Topoisomerase 6 subunit A/Spo11, Toprim domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR002815	Family	Spo11/DNA topoisomerase VI subunit A	Interproscan
IPR013048	Family	Meiotic recombination, Spo11	Interproscan
IPR013049	Domain	Spo11/DNA topoisomerase VI, subunit A, N-terminal	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR034136	Domain	Topoisomerase 6 subunit A/Spo11, TOPRIM domain	Interproscan
IPR036078	Homologous_superfamily	Spo11/DNA topoisomerase VI subunit A superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10971	MRNA EXPORT FACTOR AND BUB3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000972	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003918	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0006259	Biological Process	DNA metabolic process	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0042138	Biological Process	meiotic DNA double-strand break formation	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-