Gene detail

Detailed information of SKAU_T00095990 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00095990	TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4	CM056378.1	67132324	67156228	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00095990

CAGAGAAATCAGACGTTCAATCTGGACCAGAACTATTTCAATTATCGTTGTTTCCAATCTAACTTGTTGATTACATTAGAACAAGGCATCATTCTTTCATTTCTACAGGTGTGCAGAAATATCAAGATGGCTGTGACAAATTTTCACTACATAACTCGCATGAGTAGCGGGTTCAAAGTCTACATTTTGGAAGGCCAGCCTAACATGAGAACTGAAGATAGGTACAGACATATGACCAATGAAAAGGCTAGAATATCTCCAGTTTATCCAATCAAACGCAAGCATAGCCCTGACCGACTAATCACAACAGACGACAGGTGTGGGAAACCCAGGCGGCCGCCTCTCACACTAACATCGAGGCAGAGAGTGTTCCGGAACCTGGCCTGCAGCATCCAAAGGTTATCCAGCCTCAGCCCAAACCGAAGCCCAAACTCACCACTGACCCCCTCTTCTGCTGTCACCACCAGCACCTGGAGCCCAAATCCCAGCCCTGACAGGCCGATAAGCCCCACCCTCAGTCCTGTGTACAGCACTCCACCAATGGATGAGCCATTAGCACTTATTAAAAAACCTAGGAGAGACCAAGATGGACCAAATGCAAAGGCCCAAAACGTTACCTGCAGCCCAATACAGGTCAGACCCTCTGTGATCACCCGCATTTCTTCAAGGACCTGTCCTCCCCCAGCTATCCTGCAGCCCCCCTGCCCCTGTGGTGTCGCCAGTGGCCTATGATCACGTAGTTGAGGAGCACTTCAGACGAAGCCTGGGAGTAAATTATCACAAGGCCAGCTCCTGCCAGCTGTCTGTCAGCGTGTCCGTGGATGACCACTTCGCCAAAGCCCTGGGAGAGAAGTGGTTTCAACTCAAGGCTTCATCATCTTCctgttcctcctcttcctcccctacCACCACCAATCCCAGATTTCGCCTGTCATCCACAACATCACTGAGCCCTGTTGACTTCACCAGTGTGCCAGAGAGCCCATTCATTTCCTATCACCCTTCCTCCTGGTCAGATAAGGGACAGGCTGTCACCAGAAAATGACTGCTTTTCCCAAGATGCATTTCAATTCAAATGTGATTATATGAACAGTGAGAGACTACGCAGGTGAGCAAGTATCATGGCACGTGTGCTAACAGGAGCAGTACTTGCTAGTCTGAGTGTTATAAAGGAAGTGTTCATGTGAAATAAAGTCAAATGGAGTAATTCCAGATGGATTAAAATTACTTGTGGGGTGACGGTATTGGCCACAATGTGGCACAGGGATACAGGGAGGGTTTCTGTCAGCAGAGTGTCCAGCATCTCTTCACCCAGCAGCAGCACATCACCCAAGAGCACCTCTTCACTCAACAGCACCTCATCACCCAAGAGCACCTCTTCACTCAACAGCACCTCATCACCCAAGAGCACATCTTCACCCAAGAGCCCTCATAACCCAAGAACACTCTTCACCCAATAACACCTCACCACCCAACAGCACCTCTTCACCTACCAGAACCTCTTAACCCAACAGAACCTCATTACCCAATAGCATCTcttcacccaactgcacctcatCACCTAACCGCACCTCATTACCTAACAGCACCTCTTCACCCAACAAATCACCTCTTCTGGTGATTGAGTGTTTGTCAGCTGGGTGACTTCAGAGGAACAGCAGCAGTGACTGCTTAGATCAGCTGGGTGACTGCAGAGGAACAGCAGCAGTGACTGCACATATTGGCTGGGTGACTGCAGGGGAACAGCAGCAGTGACTGCCCAGATTGGCTGGGTGACTGCAGAGGAACAGCAGCAGTGACTGCGCAGATTGGCTGGGTGACTGCAGAGGAACAGCAGCAGTGACTGCGCAGATTGGCTGGGTGACTGCACAGGAACAGCAGCAGTGACTGAGCAGATTGGCTGGGTGACTGCAGAGGAACAGCAGCAGCGACTGCGCAGATTGGCTGGGTGACTGCAGAGGAACAGCAGCAGTGACTGCGCAGATTGGCTGGGTGACTGCAGAGGAACAGCAGCAGTATGGCTGGGTGATTGCGCAGATCTGCTGGGTGACAGCAGAGGAACTGAAAAATTAGCTGGTTTCCCATGCTCAGCAGGACACACCATTTAGTCCCAAATGTATTGAGAACATTGCAATGATGGGAAGGACCTATAATTATAATCTGAATtaaacaaaaatgtacatttcaGAATAAAGCAATAAAGGGTGACTAGACCACTCTAAGCTCAAATAGCACCAGTATAGCAGTTTGGTTTGCAGTTTTAAGAtgacaaaatataataaatatagtcAGTTAGTCAAACCTAAACCAGTCTATTGACATTTTAAGAAATAATGACTTGCACTGATAATAAACGAAAAAAATAGTCAAAAGTGATTCATTTGCAGATTCCAAgtcaatatttatgtttatatgcACATTAAAAATATACACGAAATATACTAGGGGAAGCTTAATCTTACAGGTCGAGATGGTTAAGGTGGTTGTGTGAAGATTATGCAGATATTATTTGTGTTTGTCACATATATTTGTCATATTAATGTAAGAATCCTCTCATTTTAAAAACTGTTAACATTATGTAGCATGCTGCCATTACCAGGGCAACATAACCTAGTCAGTTTGTATTAGACTTGGACTGGAATGTTCTGTAAttccccactttttttattttgtctgttGCCAGGGTTACCTGTTTTTAAATTGCATTCATTCcacaaaaaaaatgcattcattCCACAAAAGTTGTTGCCTGTAATTATGAGATACACACACGTTTTGCTGAAAAGGCATAGTTAGCCTTTTAACtgtcaaaaaatatttgaaaataatggTGACAATATTGAACCGGCACATTGTTTATTCTTGTTATAGCACGCCGCCTTTCTCAAATTTTTTTTCTTACTATTTCACTTTAAAACGTATGCTACAGTAAAGGATATAGAGGAGGAGAAAAGTTAAATTCAAGAGGTATGGATTTCCATTTAACACTTCAGCCGTAAGTGAAGTGTCAATAACAATGAGGAACATTGCAATATGAATGAATCCTGGCCTAGGACCAGCAAGCCTAATGTCTGATAACAGACAATATCTGATGATGTGCTAAACTGCTATACAAGGGCTTTTTCCCCCCATTAAATAGGTTAATTACAACCCCCTTCAGACCTGAATTATGTTCCAGGGATGGGAAAAATGCAACTATGCCTTTCCCCCCACCCTAAATGCAACCATAAATGAGATtcaatgaaaaatatttttatttgcaaatctttgttttttttttttgtacattccaGTGGACGCTAGGTCCGAACAGTTGTAAAATATAAGATTTACAATTTGATGGACTTGTATTGTTTGTTTAAtagatatatacactgcctggccaaaaaaaaagtcaccgttgtaCCCATCATGCacagtgctcactatacaaacctctggaggcagtgttatgatctgggtttgcttcaattggtcaggtctaggctcagcaacgttatgcagcaataaaatgaagtcagctgagtacctgaatgtactgaatgaccaggttatcccatcaatgggaatattccaggataacaatgccaagatttatcacgctcaaattgtgaaagagtggttcagggatcatgaggaatcattttcacacattaattagccaccagagtcctgaccgtaaccccaaagtctttgtgatgtgctggagaagactttacggagtggttcgactctcccgttgtcaatatgagatctcggccaaaaattaatgcaactctggatggaaataaatgttgtgacgttgcataaggttgtcgaaacaatgccacgatgaatgcacgccgtaatcaaagctgaaagcggtccaacgaaatattagagtgtgcgactttttttttggcc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15245	VGLL4	Transcription cofactor vestigial-like protein 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028184	Family	Transcription cofactor vestigial-like protein 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17604	TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001223	Molecular Function	transcription coactivator binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-