Gene detail

Detailed information of SKAU_T00088580 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00088580	TNFR-CYS DOMAIN-CONTAINING PROTEIN	CM056378.1	37157142	37194961	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00088580

ATGTACCTAGCTCGTAAACAACCTAAACGTTCAGAGAGGACCATCTCCTTTTCCTTATTGTCTGAGTCAGTTTTGAGCAGGTCACCCAGAATGGCCTGGCGATTTGGCCAAGAGACACTCCAACTGTTAAAAGTTCTGGTAATGGGATTCTGTCTGGTTTTCACAGCAGCTAAGGATCCGAGGGAATGCTGGGAGCAAGAGTATAAGGATCAGTCTGGGAGCTGTGTGGCCTGCAAGCAGTGTGATGCTGGACAAGAGTTGTCAAAGGAATGCGGCTTTGGCTTTGGGGAGTATGCCCAGTGCGTGCCCTGCAGGCCCGGACGCTTCAAAGAGGACGGAGGCCTGCAGAAATGCAAGCCCTGCTTGGACTGCACCCTCGTTAATCGCTCCCAGAAGGGCAACTGCTCCACCACCAGGAACGCCATGTGTGGCGACTGCCTGCCAGGgTTTTACCGAAAGTCAAAATTGAGCGGTTTCCAGGATATGGAGTGTGTGCCCTGTGGAGATCCTCCGCCTGCTTATGAACCCCACTGCAGCAGCCGGGTCAACCTGGTGCCTCTCCAGTCCACAACAAGCAGCCCCAGGGACGTGGCCCTGGCTGCAGTCATATGCAGCGCACTAGCCTCCGTCCTGCTGGCCCTCCTCATCCTCTGTGTCATCTACTGTAAAAGACAGCTTCTGGAGAAGAAACCTGCTGCATTGGCACGCTCTCAGGATGGGCCCTACAGCGGGGCAGAGCTGTCGTGTTTTGACAGACGTCAGGTCCACGAGCTGCCGCAGCGGGCTTGCTGTCACTGCCACCAGAGCCCCGGCCATACCTGCCGTCTGGACCAAAGCAGAGACGGCAGTCCAATCCAGTCCCACGGAGGCCTCAACGGCGGACTGTCAAACCCCTTAGAAGGCATTGTTCCCTTGTGCCTGGGACCTCTGGTGGATTACCCTGGCAATTCGGTTGAGACGTGGCCGCTCATGCGAGACATCCCAGAGAGGCTGGACCCGTTACCGTGCGACTGCGGGCCGAGGGAGAGGGACGTCGCCAAGTCTAAGGAGGAGGCTGAGACCCTGCTGGGGGTCCAAACCGACCGTGACCAGGATCACAGCAGCCCAGCTGAGACCCTGCTCCACCTGGAACAGCCCCTGGCGTCTTCCTCacaagCATAACATGGACTTTTTGCCTCATGCTCCAACCCTTGAAACCCCACCCCTCGCCTGGACATGAAACGAGCGCCGTCAGATCCAGTTTCAGATTACTCTGGCCTACACACAAATTTGAAAAAAAGTATAGCAGGACCAATTCAAACGGCCCTGTGACCCATAGCCTTCCGGCACACCACGGAGGGGGTCTATGTAAATACTTGTAACACCACGACTTGAAGGCAAACCCACTAGAGCAGAGGACCTGAAGAAAACCCAGCACCGGACGGAGCTGGCTGGGGGAGGGGGAAACAGAAGGCAAGTCCCAACACAACAGCAGTTTAGTTAAAAATGATGGCTGTGGACTGGTTAACACGATCTGAGTCCCttgtaaataaatttttaaaacaatatttggTCAACTTACCAAAAGAGTCCGTATGGAAACCTGTGGCACGTTGACAAAAATGACAGACTTGATGACGTTCGTGCCATATAATTACATGTGGTCTGACTGAAGTTTTACAGTAAAGttgaatgagttttttttttttttttccatgtaaTGACGTACTTTTCTGACGGTGAGCTGCTCCGAGAGGCTCGAAGAGGCTAATAGGAAGCCCACTCGCCGGTACACTGTGATATGGTGCACTTTTGAAGAAAAGTGGTAAATAAGAAATACTGAACGAGCAAAGACAATGAGAAATGTCTGGAGTTTTTTCCCTGTGGTGTCCCATTTGCTGTAGATACTGTAAAATACGAAATAGAATTCTGATATTTTTGTAATGTAGATTCCACTGCTCAGGAAGGCCAATAACTGGAAGTCTGACTCAGTTTAGAAGTGGTTTTAGTATTTGATTTTTTTAGTGTGTCTccttttatacatatttttaTAATGAATTTGTCACATACTGCTCTCTGTATTAAAAACTGCAAAAGCCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR022342	Family	Tumour necrosis factor receptor 19	Interproscan
IPR034047	Domain	Tumor necrosis factor receptor 19, N-terminal	Interproscan
IPR047526	Family	Tumor necrosis factor receptor superfamily member 19/27/EDAR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12120	TNFR-CYS DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0046330	Biological Process	positive regulation of JNK cascade	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-