Gene detail

Detailed information of SKAU_T00079670 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00079670	P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN	CM056378.1	7071481	7121639	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00079670

ATGCTGAATCTCAGGCTAGTTCCTACGTCTATTGAGCCGCTGAAACCTCATTGCCGGTGTTCCGTCCGCACAACAACATTACATCGGCAGTTAAGCGCCCGGCGGAAGACGACAGCCCCCGAGATTCTTGCGACGACGAGGCGCCGACGTTCCCTCCTTTTCTCATACCGTACGGTTGCCACCCCAACCCGAAAAAAGAAAGGTGTCTTGGAAAGTAAGCAGGAAGGAGTTGTGTCTCTCCCACCTCATCACACAAGGCGCAGAGAGATCCCTGAGCTCATCAGTGTAGCTCACACCTCTCCGCCAACACAACACTTCACCCGCTTTGCCTTCTTTGCCTCCCCTCCGCTCCTCAGGGAGCCCCTGGGGAAGACCTCATCAGTGAATAGGACAGGACGACTGAGACTGTGGTGTTCCATAACAGAGACGAGGCTGAACCACGGTGGCGACAGGGAACAAAGAAACCCAATTTTATCTTCTGCGGCTGCCTGCGAGACTCATATCCTCTCGCATAAAGCTATCTGCAATCAAATTGGCTGCTCAAAAGCACTTCTGCATCGACCCGGAGGCGATATTGAGAGAGGCTTTAAACAACATGGGAGGAATGGCACTTTTTTTTTACAAGTGTATGCCGCACACATCGTCACCAAGTGTTACTACGTGATGAGACTGCCTGTCGATAACCAGGACAGTCTGGACGTGGAGAAGAGTGTATCGgtGAAACTGCCATCCTATGACGAGGCTTTGAATCTGTCCTCCAAGCCGCCGTCTCCAGACTACCAGCTCCTGGTCAGGAGCTGGGTCAGAGCCAGCACACACACCCCCAACTCAGACACTGACCCCAGACTGGCTGCAATCCTGTGGCATCTCCTGGccatGAAGCCCAATCTGCCCTCCTACGCATGTCTCCTGCTGCTCTGCATGCTTGGGGCCCACGCCACCGTGGAGCTCCGCAACGCCGCCGCCTTGGCGGCAGGCCTGTGCAAAACTCGCCCTACGGACCTGGTGTTCATAGTGGACAGCTCCCGCAGTGTACGACCATCCGAGTTTGAGCAGGTGAAGGTATTCCTGGCGAAGGTGATCGAAGGGCTGGACGTTGGGCCTAATGCCACCCGAGTGGGCGTGGTCAACTACGCCAGCCGGGTGAAGAACGAGGTATCGCTGAAGACCCACCGCACCAAGGCTGCCCTCATCAAGGCCGTGACCCGCATTGAGCCGCTCTCTACCGGCACCATGACGGGCCTCGCCATCCAATTTGCCGTCAACGTGGCCTTTAGCGAAGCGGAGGGAGCCCGCGTGCGCTCGCCCGACATCAGCAAGGTGGCAATCATTGTGACGGACGGGCGCCCCCAGGACAATGTGCGTGATGTGGCGGCCAAAGCGAGGGAGTCTGGGATTGAACTGTTTGCCATTGGCGTGGGCCGCGTGGACATGAGCACGCTGAAGCAGATCGCCAGTGAGCCCGAGGACGACCATGTGGACTATGTGGAGAGCTACAGTGTCATCGAGAAGCTCACCAAGAAGTTCCAGGAGGCATTTTGTgTCTCGGACCTGTGTGCAACCGGAGACCATGACTGTGAGCAGGTATGCATCAGCAAGCCCGGCTCTTACAAGTGCGCCTGCAAGGATGGATTCACCCTCATGGAGGACGGGCGATCCTGCAGTGCTTGCAGTGCCTCCGCTACCGACGTGGTGTTCTTGATCGACGGCTCCAAGAGTGTGCGGCCCGAGAACTTCGAGCTGGTGAAGAAGTGGATCAACCTGATTGTGGAGAAGCTGGACGTGGCTGACACCAAGGCCCACGTGGGCCTAGTGCAGTACTCCAGCTCGGTCAGGCAGGAGTTCCCGCTGGGCCGCTTCAACTCTAAAAAGGACCTAAAGGATGCCGTGAAGAAGATGGCCTACATGGAGAGGGGGACCATGACCGGCCAGGCCCTGAACTACATCCTGGACAACAGCTTCACCCCCAACCAGGGGGCCCGTCCAGGCGTCTCCAAAGTGGCCATCGTCTTCACTGATGGGCGTTCCCAGGACTACATTGGAGACGCTGCCAAGAAGGCTAAAGAGCTTGGGTATAAGATGTACGCAGTGGGAGTTGGGAACGCGGTGGAGGACGAGCTGAGAGAGATCGCATCTGAGCCCATTGCCGAGCACTACTTCTACACCGCTGACTTCAAGACGATGAACCAGATCGCCAAGAAGCTGCACGTCAACATCTGTGAAGAAGAGAACCCCTGTGAATGTGAATCCATCGTCAAGTTCCAGAAAAAAGTAGGAGCTGCCTTGCAAGCACTAACGAAAAAATATATCCTTTACACAACTGGAGAAAGACCTCGGGGTGGGACCGAAGCCGGGAACCGGATTATGAAGACAAGGATTGTGAATCGCTCCAATCTAAACCCGATACTGTGCCAAAATCCGGGCGATTCGGCTAGAATGGACGAAGATACCCTGTTACAGCTGCTCCGGGTGTCCAAGACTTGCCCTTTCCCGGACATTAGAGAAAGAGCATCAGAACTCCTAAAAACTGCACAGGATAATGGAGTTGAAATTCCCCAGCCTCTGGCCTCGGGACCCAGTGCCTTCATCCCAACAGAGGAGatTTTGGAGCCGGGTGGGGACCAGCCAGTGCTTATGGAGGCCTTCCTTTCCATGGGGCGGGTGGACCACGTGACCATGGTTATGGCGCTGCACCCCGCCTACCTGAGCTGCTTCTTGCGTACCCAGCATGCCCTGCTGCAGTTCGACGGCCCCTTGCCCTACCACTGGAGGCACTACATTGTCATCATGGCGGCCGCCCGGCACCACTGTTCATACCTGGTGCAGCTCCACCGCTGCGCGTTCCTGCAGGCAGGCGGGGATGAGGCCTGGCTGCAGGGCCTGCACTGTGCCCCGCCCAAACTGCGCAGACTCAACCCCGTTAACAAGCTGCTGGCTCACCGGCCTTGGCTGCTCAGCCGAGAACACATCCAGGAGTTGGTATCTCCCGGGGCTGAGGACCGCTGGTCTCTAGCTGAGCTGATCCAGGCCGTGGTTCTGTTGACGCACTCCCATTCCCTCTCCTCGTTCGTCTGGGGCTGCGGGGTCAATCCCGAACCCGACCACATGGCGGGTCACGCCTTCCAACCCCCGTCGCCCTCCACCCGCCCCTCCCACAGTCCGGCGCAGGAGGCCGGCACCAACCGGCAGGGGTGTTCAGATGCGGTCACTGAGGTGGAGATCTTGATGAAGAGGATGCAGCTTCTGCAGCAGCAGGAGGAAGAGTTCAGCCAGGAGGAAATGGTGACGCGTTTTGAGAAAGAGAGGCTCGAGTGCCTGCTGGTGATGCCATGCGaTGACAGCCCACGCACCCCCCCCAGACAGCGTGCACCCGCCACTATGCGCGCTCAGGATTACTCCTGGGAGGACCATGGCTTCTCCCTGATGAACCGCCTGTACCCGGACATGGGTCAGCTACTGGAGGAGAAGTTCCAGGTGGTGTTGGGCCTTACCTACCACACCATGGCCATGCACCACGGCGTCGACACCTTCATGCTCCGCAAGGCCGTGTGGAACTACATCCACTGTGTCTATGGTATTAGGTATGACGATTATGATTACGGCGATGTGAACCAGCTGTTGGAGCGCAGCCTGAAGGTGTACATTAAGACGGTGGCCTGTTACCCAGAGAAAACCACGCACAGGATGTACTGCAGTTTCTGGAGGCAGTTCCGCCACTCTGAGAAGGTGCACGTGAACCTGCTGCTCCTGGAGGCCCGCCTGCAGGCAGCGCTGCTCTATGCCCTCCGGTCCATCGGACGCTACATGACGTGA

Transcript

SKAU_T00079670

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF04636	PA26	PA26 p53-induced protein (sestrin)	Family	Interproscan
PF10393	Matrilin_ccoil	Trimeric coiled-coil oligomerisation domain of matrilin	Coiled-coil	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR006730	Family	Sestrin	Interproscan
IPR019466	Domain	Matrilin, coiled-coil trimerisation domain	Interproscan
IPR029032	Homologous_superfamily	AhpD-like	Interproscan
IPR036337	Homologous_superfamily	Matrilin, coiled-coil domain superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12474	P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016239	Biological Process	positive regulation of macroautophagy	Interproscan
GO:0016684	Molecular Function	oxidoreductase activity, acting on peroxide as acceptor	Interproscan
GO:0070728	Molecular Function	L-leucine binding	Interproscan
GO:0071233	Biological Process	cellular response to L-leucine	Interproscan
GO:1901031	Biological Process	regulation of response to reactive oxygen species	Interproscan
GO:1904262	Biological Process	negative regulation of TORC1 signaling	Interproscan
GO:1990253	Biological Process	cellular response to leucine starvation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-