Gene detail

Detailed information of SKAU_T00079040 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00079040	TUBULIN	CM056378.1	5477159	5494952	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00079040

ATGagggAATGCATCTCCGTACACATTGGCCAAGCAGGTGTCCAGATGGGTAATTCCTGCTGGGAGCTTTACTGTTTGGAACATGGCTTCCGCCATGATGGGACTACCACTGGCTCCTCTCCAGCAGATTCTTCTTTTGGAACATTTTTTAGTGAGACTCAAGCAGGGACGTATGTTCCCAGGGCTGTGTTCATCGATCTGGAACCAACTGTGATCGATGAAATACGGACTGGATCTTACCGCCAGCTGTACCATCCAGAACAGCTCATCACTGGCAAGGAGGACGCGGCCAATAACTACGCTCGTGGACACTACACTATCGGGAAGGAGATTGTCGACTCCGTGCTGGACCGCATGCGCAAGATGTCTGACCAGTGCACAGGGCTCCAGGGCTTTCTCATCTTCCACAGTTTTGGAGGGGGAACTGGCTCTGGTTTCACCTCCCTGCTCATGGAACGTCTGTCTGTGGACTACGGGAAGAAGTCCAAGCTGGAGTTCTCTGTGTACCCTGCTCCCCAGGTGTCTACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCCGACTGTTCCTTCATGGTCGACAACGAGGCCATTTTCGACATCTGCAAGCGCAACCTCGACGTGGAGCGGCCGTCCTACACCAACCTCAACCGCCTCGTCGCCCAGATAATTTCCTCCATCACCGCCTCGCTGCGCTTCGACGGGGCCCTGAACGTCGACCTCACCGAGTTCCAGACCAACCTGGTGCCCTACCCCCGCATCCACTTCCCCCTGGTCACCTACTCGCCCATCATCTCCACCGAGAAGGCCTACCACGAGCAGCTCTGCGTGTCCGAGATCACCAACTCCTGCTTCGAACCCGCCAACCAGATGGTGAAGTGCGACCCACGTCGGGGAAAGTACATGGCCTGCTGCCTCCTCTACCGCGGCGACGTGGTGCCCAAAGACGTCAATGCCGCCATCGCCAGCATCAAGACCCGTAGATCTATCCAGTTTGTGGATTGGTGCCCTACAGGCTTCAAGGTGGGCATCAACTACCAGCCCCCCACTGTTGTTCCTGGGGCTGATCTGGCCAAAGTGCAGAGGGCCGTGTGCATGCTGAGTAACACCACCGCCATCGCCGAGGCCTGGGGCCGCCTCGACCACAAGTTTGACCTGATGTACGCCAAGCGAGCCTTCGTGCACTGGTACGTGGGGGAGGGCATGGAGGAGGGGGAGTTTACCGAGGCTAGAGAGGACATGGCGGCGCTGGAGAAGGACTACGAGGAAGTTGGGACCGATTCTGCAGAGGGCTTGATTTTGGAACAGATCAGGATGTCGATGGACGAGGTAGTGCATCGCGCGAGGCAGGCCTTTAATAGCGGCAGGTCCAGACCGCTGGAGTTCCGGGTGCAGCAGCTGAAGTGCCTTCTGCGTTTCAtcaaagacagacagacggacatcaCCACTGCCCTCAAAAAAGACCTCAACAAGagtGAACAGTCCTCCCTGCTATACGAGGTGATGTGCCTGGAGGGGGAGATCTCCCTGGCGGTGGACAGGCTGGCGGAGTGGGCGGAGCCTCGGCCGGTGGAGAAGACCTTGCTCACCATCACTGACCAGGTGTTCATCCAGCCGCAGCCCCTGGGTGTGGTGCTCATTATAGGAGCCTGGAATTACCCCTGGGCCCTTACCATCCAGCCCCTGATCGGAGCCATCGCTGCTGGTAATGCAGCTGTACTAAAGCCCTCAGAGGTTAGCATGCACTCTGCCAAGGTCTTACAGGAGCTGCTTCCTTTATACCTGGACCAGGAGATGTATCCCGTGGTGTTGGGGGGTGTGGCAGAAACCCAGGAGCTGCTGAGGCAGCGCTTTGACCACATCTTTTACACggggagcagcagtgtggggaaaCTGGTGATGGAGGCCGCCGCCCGTCACCTGACCCCCGTTACCCTGGAGCTGGGAGGGAAGAGCCCCTGCTACATACACAaggactgtgacatcacaatcgcCTGCAGGAGGATCACCTGGGGGAAGTTTACAAACTGCGGTCAGACCTGCATCGCCCCCGACTACATCCTGTGTGAGCCCAGCATCCAGGACAGGGTGGTGGAGGAGATCAGGAAGAGCGCGCAGGAGTTTTACACGGACGACCCTAAGGCCTTTCCAGACTACGGCCGCATCATCAACCTGCGCCACTTCAGGAGAGTGATGGCCCTGATGGAGGGCTGTACTGTCACTCTCGGGGGCACGAGTGACGAATCGCAGCTCTACATCGCCCCCACTGTCCTGACGGATGTGGCCCCCGACGCCAAGGTGATGCAGGAGGAGATCTTTGGCCCCCTGTTGCCCATAGTAACAGTCAGCGGGGTGGACGAGGCCATTCGCTTTATCAACAAGAGAGAGAAGCCCCTGGCCCTGTACGTCTTCTCCTCCAgcaacaggctgATCAAGCGCTTCGTCACAGAGACCTATAGTGGGGGATTCCTGGCCAATGACTGCCTCGTACACTGCACCATCAACGCCCTGCCCTTCGGTGGAGTGGGTAACAGCGGGATGGGGTGTTACCACGGGAAGCACACCTTTGATCAGCTGAGCCACCTGCGCGGGTGCCTGCTGAAGCCGTTGGCGCACGAGGCGGTGAACCGGATGCGCTACCCGCCGCACACGCGAGACAAGCTGCGCTGGGCCTACTTCTTCTTCCTGCGGCGAGTCAACCTGGCGCGGCTGCAACGCGTGGCCCTGTTCTCCGCCTTCGCTGTGCTGGCCGGGTTCTGCGCACAGAGGTTTCTACGAAAACAGTGA

Transcript

SKAU_T00079040

CTTTGATGGTTCTTGTTGGTCAGGAGGCAACAACATCAGTGGAGTTCAGAAGTAAAAATGagggAATGCATCTCCGTACACATTGGCCAAGCAGGTGTCCAGATGGGTAATTCCTGCTGGGAGCTTTACTGTTTGGAACATGGCTTCCGCCATGATGGGACTACCACTGGCTCCTCTCCAGCAGATTCTTCTTTTGGAACATTTTTTAGTGAGACTCAAGCAGGGACGTATGTTCCCAGGGCTGTGTTCATCGATCTGGAACCAACTGTGATCGATGAAATACGGACTGGATCTTACCGCCAGCTGTACCATCCAGAACAGCTCATCACTGGCAAGGAGGACGCGGCCAATAACTACGCTCGTGGACACTACACTATCGGGAAGGAGATTGTCGACTCCGTGCTGGACCGCATGCGCAAGATGTCTGACCAGTGCACAGGGCTCCAGGGCTTTCTCATCTTCCACAGTTTTGGAGGGGGAACTGGCTCTGGTTTCACCTCCCTGCTCATGGAACGTCTGTCTGTGGACTACGGGAAGAAGTCCAAGCTGGAGTTCTCTGTGTACCCTGCTCCCCAGGTGTCTACAGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCCGACTGTTCCTTCATGGTCGACAACGAGGCCATTTTCGACATCTGCAAGCGCAACCTCGACGTGGAGCGGCCGTCCTACACCAACCTCAACCGCCTCGTCGCCCAGATAATTTCCTCCATCACCGCCTCGCTGCGCTTCGACGGGGCCCTGAACGTCGACCTCACCGAGTTCCAGACCAACCTGGTGCCCTACCCCCGCATCCACTTCCCCCTGGTCACCTACTCGCCCATCATCTCCACCGAGAAGGCCTACCACGAGCAGCTCTGCGTGTCCGAGATCACCAACTCCTGCTTCGAACCCGCCAACCAGATGGTGAAGTGCGACCCACGTCGGGGAAAGTACATGGCCTGCTGCCTCCTCTACCGCGGCGACGTGGTGCCCAAAGACGTCAATGCCGCCATCGCCAGCATCAAGACCCGTAGATCTATCCAGTTTGTGGATTGGTGCCCTACAGGCTTCAAGGTGGGCATCAACTACCAGCCCCCCACTGTTGTTCCTGGGGCTGATCTGGCCAAAGTGCAGAGGGCCGTGTGCATGCTGAGTAACACCACCGCCATCGCCGAGGCCTGGGGCCGCCTCGACCACAAGTTTGACCTGATGTACGCCAAGCGAGCCTTCGTGCACTGGTACGTGGGGGAGGGCATGGAGGAGGGGGAGTTTACCGAGGCTAGAGAGGACATGGCGGCGCTGGAGAAGGACTACGAGGAAGTTGGGACCGATTCTGCAGAGGGCTTGATTTTGGAACAGATCAGGATGTCGATGGACGAGGTAGTGCATCGCGCGAGGCAGGCCTTTAATAGCGGCAGGTCCAGACCGCTGGAGTTCCGGGTGCAGCAGCTGAAGTGCCTTCTGCGTTTCAtcaaagacagacagacggacatcaCCACTGCCCTCAAAAAAGACCTCAACAAGagtGAACAGTCCTCCCTGCTATACGAGGTGATGTGCCTGGAGGGGGAGATCTCCCTGGCGGTGGACAGGCTGGCGGAGTGGGCGGAGCCTCGGCCGGTGGAGAAGACCTTGCTCACCATCACTGACCAGGTGTTCATCCAGCCGCAGCCCCTGGGTGTGGTGCTCATTATAGGAGCCTGGAATTACCCCTGGGCCCTTACCATCCAGCCCCTGATCGGAGCCATCGCTGCTGGTAATGCAGCTGTACTAAAGCCCTCAGAGGTTAGCATGCACTCTGCCAAGGTCTTACAGGAGCTGCTTCCTTTATACCTGGACCAGGAGATGTATCCCGTGGTGTTGGGGGGTGTGGCAGAAACCCAGGAGCTGCTGAGGCAGCGCTTTGACCACATCTTTTACACggggagcagcagtgtggggaaaCTGGTGATGGAGGCCGCCGCCCGTCACCTGACCCCCGTTACCCTGGAGCTGGGAGGGAAGAGCCCCTGCTACATACACAaggactgtgacatcacaatcgcCTGCAGGAGGATCACCTGGGGGAAGTTTACAAACTGCGGTCAGACCTGCATCGCCCCCGACTACATCCTGTGTGAGCCCAGCATCCAGGACAGGGTGGTGGAGGAGATCAGGAAGAGCGCGCAGGAGTTTTACACGGACGACCCTAAGGCCTTTCCAGACTACGGCCGCATCATCAACCTGCGCCACTTCAGGAGAGTGATGGCCCTGATGGAGGGCTGTACTGTCACTCTCGGGGGCACGAGTGACGAATCGCAGCTCTACATCGCCCCCACTGTCCTGACGGATGTGGCCCCCGACGCCAAGGTGATGCAGGAGGAGATCTTTGGCCCCCTGTTGCCCATAGTAACAGTCAGCGGGGTGGACGAGGCCATTCGCTTTATCAACAAGAGAGAGAAGCCCCTGGCCCTGTACGTCTTCTCCTCCAgcaacaggctgATCAAGCGCTTCGTCACAGAGACCTATAGTGGGGGATTCCTGGCCAATGACTGCCTCGTACACTGCACCATCAACGCCCTGCCCTTCGGTGGAGTGGGTAACAGCGGGATGGGGTGTTACCACGGGAAGCACACCTTTGATCAGCTGAGCCACCTGCGCGGGTGCCTGCTGAAGCCGTTGGCGCACGAGGCGGTGAACCGGATGCGCTACCCGCCGCACACGCGAGACAAGCTGCGCTGGGCCTACTTCTTCTTCCTGCGGCGAGTCAACCTGGCGCGGCTGCAACGCGTGGCCCTGTTCTCCGCCTTCGCTGTGCTGGCCGGGTTCTGCGCACAGAGGTTTCTACGAAAACAGTGAAATGGACGATCCGGTAACTGGACCAGAACCGGAAACGGGAGAACAGCCGATGGCCGTGTGGATAAACTCGCAGAGATCAGCCCGTCCCTGGACTGTCCAGCTGCAGCTTCCAAATCAAAGAGCGTTAATTCTCCTCACGCGCCATGGCCCCAACTGCCATTTCTGAGTCCGTTTTAGTTCAAGATTTAAACTATTTCAAGACCTAGAACTTGAACACAGTTAAaacgtaggctactgtagcctacataacaCAAAATATTAATTGAAGTTTCATTCGAGCTTTGAACTTCATTGGTGAACCAAGAAAGATTATGTTCGTTTTTGTGATGTTTTAGTTTCACATTTTTGTTAAATCCTCCTGTGTTaactttgtttattattattattattattattattattattattatgtctacTGGCTGTTACTGCAATTTTTGATAATTTGAGGTTTAAGTCGTTGATTTTAAACTGGGGTTACGTTATTTCTTTTCTGCGTTATAAGCAAAATTACTATACAAAGCTATATCCTCCATTGTCATttttgctgatttttttaaacattttgtttgttactatttatttgtatagcttcAGTCCTTTGATTCTATAGTAAAGGCTatattaggctagcctacttagtatttttctaaattgcaaTACACACTTTACTGTAAACCTAATAGGTGTTCAAGTAGCCTACATAGCCTAAATATACAGGCCTATTGCGGGAGTTTTGATTCATACCTAATGGTTTTCATCATGTTTGgctgcaaataaaagaaaaaatgccTTGTGAGACATGAGCCTACTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000217	Family	Tubulin	Interproscan
IPR002452	Family	Alpha tubulin	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016160	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR029510	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11588	TUBULIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-