Gene detail

Detailed information of SKAU_T00076800 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00076800	ZINC FINGER PROTEIN	CM056377.1	130815325	130825121	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00076800

atttattcgcGAGGCCTGAACACCGTTATCTATAAAAGATAATTttcgtaaaaatacacataaccTGTGTACATGGGGGGGGAAAAGCAACATCATACAGGTTTCGTTGTATTAATACGGCCTCGTTTACAATATTTACTTTAGACTTACaaccttccactgccttgtgtatGTACAGAGCTTAAGGGTGTAAGGCTTACTGGCCCATAATGGTAAGAAGAAAGAGAAGTGTGCGGGCACTGCTTGAAGAGAAAAGGAACAAAGCCAGAGCTAAAAGGTCAAAGTTGGTAGAAGTGAGCAGCTTTTCGAGTGAGGAGCCAGCAGAAAAGAAACTGAAGCTTGAAAATGAACAACCTTCGGCACCTAGTTTGACTGAAAATGTGAAGATGAACAATGCCAGAAAGAGATGTTTCTGGACGCAGGAGGTGATGCTGAGGGCCGTAGAGTCATGCAGGAACGGGATGACCGTgaggcaggcagtcaggctctaCGAGGTTCCACGGTCGACGCTGGCGGACCGGGTCAATGGGAGGGTGACCCATAGTGCAATTGGCTGGCCAGGGCGTCTCTTGTCCAAGTCAGAGGAGATGTCCCTGGCCCACTACTACCAGGACATGGCAAGCCATGGGCACCCTCTCACCATGGCCCAGTGTTTAGCCTTTGGCACCTCCATCAGGAGGAAGAGGCATCCGAACGCCAAGCCTCTCTCCCGTACCTGGTGGCGGaacttccgccggcgtcaccgtGAGGAGCTTAGGATGAGGCCGCCGGACATTAACGACAGCGGGGGAGCCATGTCTGCCGGGGAGATAATGGACAATTGGTGGATTCCACAGGGCTCACTTAAGAAAACATCCAATCAGAATCTGTGCTTCACTCTAAGAGCTTCAAGCCCCGCCTCTTCAGGTGAAGACATGAAGACAGAGCCTGTGATGGACAGCACAGATTACTCAGGGGCGGAGTTGAGATCCAGTTTGATTAAAAGTGAAGACATTGAGGAGAGTATAGAGAGGAAGAATGGATatgggatgagcagggaggaaaaACCCATTCTCTCCAACataaaggaagaggaggaggaaggtgggGAGAGGCAAGGTGAGGAGGTGAAGAGGGAGGATGGTGTGAAAGATGAAGAGGCCGAGGTATTTGAGTGGAAACGAGAAATGAAGAGGGATGAATGGAGGGAGGGACATGAAATCATACAAACCCCCCAAACTGACATGGGGCTGAACAAAGAAGGAATACCACACCTCAACCAACAGGAAGGGGATGGCTCATCATCTTTGGTCACTTCCTGTTTGCTCAACCAGCCTAGAGTACCGTCCCCTGGATCTCCTATCATCTCCTCCAGTAAAGGACAGTCGGAGGTGTttgcctgctcccagtgcccattcgTTCACATGGAAGAAGTGAagcttcaccagcacattgagaaggttcacccaGAGGAGCACAGCAGGATTCTGAGGTCTGGAGGAAACGGAGCAGAGAACCCACTgcctcccagcagcacacatcagcaccccacaccccctaagacactccccaccccaacacagtcccacacaggcaCTCCAGGGGCCCACACCTGCTCCcactgtgggaagagcttcagagCTAAATCACGTCTGACAACGCAtgagaaaattcatacaggtgactGCCCGTACCAATGCTCTGCGTGGGAAGAGCTTCCATCAATCAAACTGTCTTAAAGTGCACCAGAGAATTCACACAGGAGAGCGCCCGTAccgctgctcccagtgtgggaaaagCTTCCGTTGCTTGGCGGCTTTAAACAGACACCAGCAATGTCATGCAGGAGAGCGCCCATACCactgttctcagtgtgggaagagcttaaTTGAGCCAGTCCGTCTTAGAGATCGTGGCCTTAGtgtacaccagagaattcatacaggagaGCGACCTTACTCCTGCTCCCTGTGTGAGAAAAGGTTTAGCTGCTTAGCTTCTTTAACCAGACATCAGAAAATTCATACCAATGCTCTCAGTGTGGGAAGGGCTTCACTCAGTCAATCGTTCTTACAGTGCACCAGAGGACTCACACAGGAGAGCGCCCATACCAATGCTCTCAGTGTGGGAAGG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HTH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05225	HTH_psq	helix-turn-helix, Psq domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007889	Domain	DNA binding HTH domain, Psq-type	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24390	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-