Gene detail

Detailed information of SKAU_T00060650 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00060650	NEUTROPHIL CYTOSOLIC FACTOR 2, NEUTROPHIL NADPH OXIDASE FACTOR 2	CM056377.1	64431676	64676829	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00060650

TTGCATAGCGCTACCAGTGCAGAGGACCCATCAACATTATTTATGTGAGATGTCTTTTGTGAACACCATCCGCCAGTGGGATGAGGGGGTGGCTTTTGCTGATATGGGGGACTGGGAAACTGCACTCAGGGTACTTCTGGATATCCAGGACATTAACTCAAAAATTTTTTTCAACATTGGTTGCCTACACCTAATCAACCAAGAACTGGATGATGCTGAAAAGgctTTTGACAACAGCATCTGCAAAGACGAGCACTTGGCTGTTTCCTTCTTTCAGAGAGGAATAACATTTTACAAAAAACTGAAGTTTGAGGAATCGCTGGGTGATTTCCAGAATGCCTTCACAGAGTTGCGAGGAAACCAGCTTATTGATTACAAGCCTCTGGGTCTGAGGTACAAGCTGTATGCCTGTGAGATCTTACACAATATTGCCCTGGCCCAAGCTCAACTGGGCCAGTGGGAGAAAGCCCAGGAGAACCTGCTCACTGCGCTCAGCCTCAAAACTGAGTCAAAACATGGCCACATTGACAAAGCTCTGGAGTCTGTCCTGAAGCAGAAGCTATTTCAGCCAGTTGAGATCCAGGAAGGGGCATTGTTTAGACCTAATAAGCACTACGTGGCTGAGTTGGAGAAGAAGGACTACCTGGGCAAGGCTAAGGTGGTTGCCTCTATCATTCCTAAGGATGACTTCTCTGGGTTTGCTCCCTTACAGCCACAGGTAGAAGTAGTTCCTGCCAGACAGAAAACACCGGAAGTACtgagGGCACTGGAGGGAGAGCCACACAGTGTACGATACGAGTTTATCGCTGAGACAGTTGAAGAGTTGACAGTGTTGCCTGGGAACATTGTGTTTGTATTACAAAAGGGAGTAGACAACTGGGCCTCTGTCTTCTTCAATGGGAAGATGGGTCTTGTGCCTTATAATTTCCTGGAGCCAGTTGAAATAACATCATGCAAGCAAGGACTGGAGGGGGCTCCTTACAATGACATCCCAGCCCCACCACTGGGAAAGCCACCAAGCAGGCCTGAAAATAGTGAAGATTTGGATGCCTCTCAGAATGCAAATGCAGTGAAGACCTCAGATGAGGATCTCATCAAAATGTGTATTCTGAAAGTGCAGTTCAGATACACTGTGGCAATTCAAACAGCAATCGGACTTTCATACAGCACTGTTCTCCATAGAATCAGCAAGAAACTGAGTCTACCATTGGATACAATAACTCTGAGTTATAAGAAAACAGCCTATGATAGAATAAATGCAGATGAGCTGGAGATGGAGAACATCTGGAGGAGTGCGCAGAATGGCCGTCTGACATTGTGGTGTGATGTCAACAAGGACAAAGAAAACAGGCCTTTGTTTGTTGCCCTTTACACGTATGAGGCTACGCGACCAGAGGACTTGGAGTTCTGCAAGGGTGATGTCATCACAGTTTTGTCAAAAGTCAATGAAAAGTGGCTCGAAGGACAGTGCAAAGGAAAAGTTGGAATATTCCCAGAATGCTTTGTGGAAAAAGCAATGAGTCATCAGAGGAATCCACTGTGATTATGTCAACATGATTTTTCTGTTGTTACATTCAAGAGGCATTTGGGAGAATCGTATGCTAAAATTTGCCAATAAAGCGCAAGAGTCATGTTTACCATACTTTATTTAGGTCAACAGCATTTTGATgcagctttcctgaatttggctatggaaGAATTtgacaacaaacaagtttgcaagcaaaattacaaagAGTGAATAAGCCTATGCTACCTATTCTcttttaaaataatgcaaaatgcgAGTAGCTTAGCACCCCTTTCATTTTCTCAtagtctagagctagctaggttgacgttgttgcCCTGATGCTATGAATAGCATAGAATATGTTTGTTAAAAAATTGTAGGCTAGAGCTCATCTAACTATTTACTAGTCATAATTGTGCATTGAATACACCTGTCTACCACATCTACAGTATAAGTATGTTTCATTTGCTGTGTGGGATTACCCTGATAAAGGCAGTTCAGCCGCAGGTTAGCAGCAGTGTTTTAATGTTCCTGCC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR034889	Domain	Neutrophil cytosol factor 2, SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051864	Family	NADPH Oxidase Activator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15175	NEUTROPHIL CYTOSOLIC FACTOR 2, NEUTROPHIL NADPH OXIDASE FACTOR 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006909	Biological Process	phagocytosis	Interproscan
GO:0016176	Molecular Function	superoxide-generating NADPH oxidase activator activity	Interproscan
GO:0042554	Biological Process	superoxide anion generation	Interproscan
GO:0043020	Cellular Component	NADPH oxidase complex	Interproscan
GO:0045730	Biological Process	respiratory burst	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-