Gene detail

Detailed information of SKAU_T00040870 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00040870	-	CM056377.1	2142080	2184093	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00040870

ATGAGCCATGTTCTCAACTGTGTATTGAAAGAACGGTACCTGTCCTGTGCCGGGACGAGGGATATCCCAAGAGCCTCTTGGCCGTTCCTCAAACGCACCTGTGTGGTTGCCGTCTATGTGGCGATCATCATGTCCTTCCGCCTGTGGGTCATGGGCGGCTCCATGCCGCTGTTTGCAGAGCAAGACAACCCGGCTTCATTCTCCGCTCACCTGCTCACCAGGTTCCTCACCTACTGCTACCTGCTGGCCTTCAACGCCTGGCTGCTGCTGGCGCCCGTTGTGCTCTGTTACGACTGGCAGGTGGGCAGCATCCCGCTGGTGGAGTCCGTGTGGGATGTGCGCAACGTCGCCACCTTGCTGCTCGGAGTGGCAATGCTCTCCCTCTGCCTGCACTGCCTTACGTCGCTACGGAGGCTGGAGGAGAAGGAGGTGTTGGTGGGGCTGCTGTTCCTGGTGTTCCCCTTCATCCCAGCCAGTAACCTCTTCTTCCGAGTGGGCTTTGTGGTGGCCGAGCGCGTCCTCTACATGCCCAGTATGGGGTACTGCATCCTGGTGGTGCACGGGCTCAACAGGCTGTGCTCCCTGGCGGGAAGGTGGGGCGCCACGGCTCTCACCGTGTCCATGCcgctgctcctcctgctcttcTCCTGGAAGACCGTCCAACAGAACGAGATCTGGCTCTCCCGCGAGGCCCTCTTCAGATCTGGCATCCAGACTCTGCCCCATAATGCCAAGGTGCACTATAACTATGCCAACTTCCTGAAAGACCGGGGGCGCAACCAAGAGGCCATTCATCACTACAAAACCGCTCTGAGGCTGTACCCACGGCATGCCAGCGCCATGAATAACCTGGGAACCCTGACGCACCACCCAGAGGAGGCGGAGCGCTACTACAGACAGGCCCTGGAGATAAACCCTCTACACAACAGAGCGCTCTTTAACCTGGGAAACCTGCTCAAGTCTcaagggaaagaggaagaggctGAGAGAATGCTGAGGAGCTCCATTCTCTTTGGGCCGCACTTTGCCGACGCCTACTCCAGCCTCGCCTCCCTATTCGCAGAGCAGAAGCGGTTTGCTGAAGCCAATGAGATCTACCTGCAAGGTATTGAGAGTTGTCCAGACAGTTCAGATTTGCACAACAATTACGGAGTTTTTCTGGTGGACACAGGTGACAGTGAAAGAGCGTTCATCCACTACCAGCATGCCGTGCGGCTCAAGCCTGCTCACTACGTTGCCATGGTGAACCTGGGCCGGTTGCTGAGGTCCTCCAGTGAGAACAAGCAGGCAGAAGCCTGGTATAAGagGGCCCTGCAGGTGGCGCGGAAGGTGGAGATCCTGACTCCGCTGGGGGCGCTGTACTACAACACGGGGCGGTACGAGGAGGCTCTGCAGGTGTATCGCGAGGCCGCCGCGCTCCAGCCCGACAGCGCCGACATCTGGCTGGCCCTGGCCCAAGTGCTCGCCATGGCCGGCCGCTCAAAGGAGGCGGAGAAGATGACCTTTGGGATCATCTCCAAAAACGCGGGCTGCATCGAGTGCTACCGCCTCCTATCTGCCATATACAGCAAGCGGGGAAGCCACGAAGAGGCTCTGGACACTCTAGAGAAAGCCCTGCAGCTGAACCCCAAAGAGACGGGCGTGAGGGCGGAGCTGCACTTCTCCAAGGGGAACCAGCTGAGGGAGATGAACATGCTGGACAGTGCCTTTGAGAGCTACAAGTTAGCCGTGGAGCTAAATCCTGACCAATCACAGGCCTGGATGAATATGGGCGGCATACAGCACATCAAGGGAGACTACGCCTTGGCTCGGACGTACTACCAGAGGGCCCTGCAGCTGTCACCCGGCTCCAAGCTGCTGAAGGAGAACCTGGCCAAGCTGGACAGGCTGGAGAAGAGACATAACGGGACGTAGggcggaggaggagagggagaacgGGATGTAGGGCGGAGGAGAAGATGCGCGCACAACGGGGCCTGTGATGAGCCCCCCCCGGGGGCCCCCACTGTGGTCTggggtgtctgtatgtgtgtgggggtatcaGGGGTGAGGAAGAGGGACTGGATCAGGGGTGAGGAAGAGGGACTGAACCAGGGGGGATCAGATCCATTTAGAGGGGCTGTGATGAGGCCTGGGGGTCCCCTCTTCCACTCTACAGCTTTAAGAATCACACCGTATGCATTAATCTTCACCCGCCATTAATTCTGCACCTGAAAAATCACATATCCCTTACATTCATCTCACCTTTTACCTTGTTCTCGATCACGTAGAACGGGGGTcgggaaccttatccgaaaagggccggcgtgtgggtgcgggtttttgttttagcccggcactaacacacctgattctactcatcaaGGTATTGGTTGAAGGCCATGATTAGTtaatcaggtgttttagtgccgg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08409	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013618	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR052943	Family	TMTC O-mannosyl-transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44809	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000030	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0035269	Biological Process	protein O-linked mannosylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-