Gene detail

Detailed information of SKAU_T00040750 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00040750	RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY	CM056377.1	1891412	1906845	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00040750

ATGCGTGAATACAAACTGGTGGTCCTGGGGTCGGGAGGCGTGGGGAAGTCGGCTCTGACCGTGCAGTTCGTTCAAGGAATATTTGTGGAAAAATATGACCCCACAATAGAAGATTCATACAGGAAGGCAATGGAGGTGGACGGGCAGCAGTGCATGCTGGAGATCCTGGATACGGCGGGGACGGAACAATTCACAGCAATGAGGGACTTGTACATGAAGAACGGCCAGGGCTTCGCTCTTGTATACTCCATAACGGCGCAGTCGACGTTCAACGACCTGCAGGACCTAAGAGAACAGATCCTTCGAGTCAAAGACACGGACGACGTGCCCATGATCCTGGTGGGGAATAAGTGTGACCTGGAAGACGAGCGGGTGGTGGGGAAGGAGCAGGGTCAGAACCTGGCCCGACAGTGGAACAGCTGCGCCTTCTTAGAGTCTTCCGCCAAGTCAAAGATTAACGTTAACGAGATCTTCTATGACCTGGTCCGGCAAATCAACAGGAAAACCCCAGTACCCGGGAAAGCACGCAAAAAGTCCTCCTGTCAACTGCTCTAATGCACAGCTGTACATCACTCTGAGCCAGgTCTGATAAACTGCTGTCCCTCTTGGCAGTGCCAGCATCACGACTTTACTAAACCTAACATTGGGCGGACTTTCCTGCGTGGTGTGTACCTTTTAACAACCGAAATCAACCGACCGAACCACCCAACCTACGGATCCAAGGCTACCAcatcagttttgcacatccataACTGAAATCACCCTTCAGTGTGGCGAGagatttttacatatatatatatatgtatgtgtatatatatgtgccaATACATATATGTTTGTATAcatatatgtacgtatatatgtatgtatatatataaataaaaaatagctgtATGCAACTGAAATGAGACCAAGAACCTACACACAGTATTATTGCTAACAGAGCAAACGTCCTTCTCCAGTCACCAAACTGTCAGAGATGGAGGCCTGTCCGGGCTGTAGAAAATGCCAGGTGTTTGCGTTGGTGAGTACAACAATGTAAATGATATAAAATCACCACTATTCTAGCAAGAGAAAACAGAAAGTCCAAAGAGCGCCTATATAgcctatttcatatttcatatttcatatagcTAACTTTACTCCTCTGGTGTTTTCTACCTTTTATTCCCACacttttgtttttcttcttttttttaaaagttactaGACTTTGTTCAAGATGCTATATTGCGACTGCTATTAATATGATTTTATCTTAGGACAACCTGTGGATACAGTAACATCTgtgtataataaaaatataatggaCACCTGTCACTATTGTCTTTAGCTTAAGGCCTTGCCTTCAAATATATGTTAGTTTTTCTTTGAGGTAAATCCAATTGAATTCCAATCAGTCTTTAATTCTGTGTATTATTGAGCTTTGTTTACATAGATGTTTGTACAGTGGGGGTTTACAAGAGGGATTCTACAGAGAAAGGCCTTGCACCTCGCTGTTGACTATGAGAGTTGAATGGCAACCCGTTTTTTTATGAACGTGTCCAGCAATCTCATCGGTTTCTTCCTATCTGTTTGGGTAAAAATACCAGGTCAACCGTCAGATCCTTCTCTATAGAATCCTTGATCTACAACAGGaagattatattttaaaatgaggGTTTTTAATAAAAATGTCATTGGTGAAGTCGTTCTCCATGCTTGTGTCGCTGTAGATTCTCACTGTAACCCCTTCACCCTAGCCCCCCCCTGCTTGCTCATGCATCCATTGTAAATGGAGGATATAAGAACCAAATACTGGGTCCAgtttagttaaaaaaataaataaataaataaatgcctgtTAGTGATTGTTTCACCTGTGTAATATTTGGGTTGAGATGTTTCTTGGTGGACAAGTAACTGTGGGTTTGTTAGTAGTGATTGTCAGAGACTTCTATAAAAAAATACTCAAGATTAACTGGAGGGTGGAGTGAAAGTTGcaagtttttttccagtagttctgctgaattatttaaaaagaaTGCCTTGTTGCTTTTGTATGCatcgaaaaacaaacaaaaaaaaaactcctggaTGTAAAAAGTGTTCATGTCCCAGTGCAGGGCCACGGTGTTTGAAATGCAACATCTGCTTTtattggtgggggggtggggcggggggtagGGTGGGGGGAGTGGCCAAATGTAAACTAAAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR020849	Family	Small GTPase, Ras-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038851	Family	Ras-related protein Rap1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24070	RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019003	Molecular Function	GDP binding	Interproscan
GO:0032486	Biological Process	Rap protein signal transduction	Interproscan
GO:0071320	Biological Process	cellular response to cAMP	Interproscan
GO:2000301	Biological Process	negative regulation of synaptic vesicle exocytosis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-