Gene detail

Detailed information of SKAU_T00024880 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00024880	HMG BOX-CONTAINING PROTEIN 1	CM056376.1	92525648	92557652	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00024880

ATGAGTATAGAAATTCCCGAAGGACTGACGGAGCTATTGCAAAGCTTTACCGTGGAAGTGTTGAGGAATCAGCCCCGAGATCTGCTGGAGTTTGCCCTGCAGTACTTCACTCAATTGAAGGAAAGTCAGAGCCAAGGGGTCGCTTTTGGCAATGACCAAAATTCGGCTATTAGACCTGGGAAGGCAGTCAACTTTATGGAGGAAGCCATGCAGATCGACTCGGAAAATggggaggatgaagaggaggaggacgaggaattCGTAGctcCAGTGATCAATAGATATGTCAGAAGAGCTTCAGTGTGCGCTGAGGCGTTCAACCCAGATGACGACGAGGAAGACAAGGAGCCCAGGATTACGCATCCTAAAACAGATGAGCAGCGGCAGAGACTGCAGGAGGCATGCAACAACATCCTTCTGTTTAAAAACCTAGACCCGGAGCAGATGTCTCAGGTGCTGGATGCCATGTtcgagaagcttgtggaagccACCGAGCACATCATTGACCAAGATGGCGACGGCGATAACTTCTACGTCATTGAAAGAGGTACTTTTGACATCTTCGTGAAGGTTGACGGCAAGGAACGCACCGTGGGCTCCTACGACGACCGTGGAAGTTTTGGGGAGCTGGCTCTGATGTACAACACTCCAAGGGCAGCCACCATTATTGCTACCTCACCTGGTGCTCTTTGGTGCCTGGACCGACTGACGTTCAGAAGAATCATTGTGAAGAATAAtgccaagaagaagaagatgtaCGAGGCCTTCATAGAGACCCTTCCATTGCTGACATCGCTCGAACTATCTGAGAGAATGAAGGTGGTGGATGTGTTATCCTCAAGAGTTTACAGCGAGGGCGAACAGATCATTGCTCAGGGAGATTTGGCTGATTGTTTCTACATTGTGGAATCTGGAAAAGTTAGAATCACTATGAAGAGGAGCAAATCAAAGAAAGACACGGAGAATGGGGAGGTAGATATTGCCATCTGCACCAGAGGGCAGTATTTTGGAGAACTTGCTCTGGTCACTAACAAGCCCAGGGCTGCTTCAGCGTATGCCGTGGGAGAAGTCAAATGTCTAGTTATGGACGTCCAAGCCTTCGAGAGATTGTTGGGCCCCTGTATGGACATCATGAAGAGAAACATTGAAAACTACGAAGAGCAGCTAGTCGCCCTGTTTGGAATGACATCTCTTGTTAAGtCAGGGGAGCTGACATGGCATAATATGGTGTGGGAAGTGAAGACTGAATTGGTGCCACACAGTACAGAGCAAGGCCAGCAGGTGGAGCTGCAGAGCGTCTCAGGAATGGATGAAGCCTTCGACATGCTCAAGTGCAATGAGGACCTTCCATCCTCCCCAGGATGCCCTACCAGTGAGATACGCATGGAGTATGACGACCTCCCCGAGCTGCAGGAGGTGCAGGAGAGCCGGGCGCTGCCAACGGCGTTCCAGGTGGCGGCAAGAGTGTCCCATCAGGAGCGTCCGCGGGATACCTGGAATCCCGCCCCTGACGGCGGCTCCCCCAACACCAACTGGCTCACAGAGCTAGCCAATATTGCCACGAGCCCACAGAGTCCCCTCTTACAGAGCTCCCCCTGCAACAGGTCCTCCCCTGTCCGCATCTTCGCCACCAGCAACAGTTTACATTCCTATGCTCGCCCACCACTGGCCTCCAGCAGTGCGCCCAGTCCTGCCCGCAGCCATTTGAGAGAGCGCAGACGGGTCAGGGCCAGCAGCGAGTCTGAGTCGGGCGTCTTCTGCACGTCCTCTCTCTCGGACGATGATGACATGGGCTGGTCCCATTCAtggccctccacagcctggcacTGCTTTCTGAAAGGCACACGTATGCGCTTCCACAAGGGGCCCAACGTAGAGTGGCAGGACGTCGAGGACCTGGGCGACTCTGACGACGAGTCTGACGACGAGAGAGAGACACTTTGCCGCTCCCTGAAGAGCTATGGTTCTGAAGGTCTAAAGTTAGTGGCCCATGAGGAGACAGTGTCTTTCGGCCAGTCAGTTCTCaaattgacctttgaccctggttCGCCAGAAGATGGCCTCTTAACAGCAGAATGCAGATTGGATCATCCCTTTTTTGTCAAAAGTAAAGgCTGGGCCTCCTTCTACCCGAGCCTGACCGTGGTCCGGCACGGGATCCCCTGCTACGAGGTTCAGCTGGGAGACGTGTGCCTGCCCCCAGGACACAGAGACGCCATCAACTGTGACGATTCGGTCGTGTTCGACACGTTCAGGAGCTATGACTTCACCCCGCTGGACTCGTCGGCTGTGTACGTTCTGAGCAGCATGGCCCGCCAGCGCCGGGCCTCCCAGTCCAGCGGGGGCGCCGTCAGCCCCGACTGCGAGAAACTGGGCCGGGACCCCGAGCCCCCCGGCCCCTCCCAGTCCCCCCACGGCAAGGCCAACAGGAGCCACAGCTCAGGGACAACCAGCAGTGTCACGCCTACCAAGTGCAAGCGGCCAATGAACGCCTTCATGCTCTTTGCCAAGAAGTACAGGGTGGAGTACACACACATGTACCCTGGGAAGGACAACAGAGCCATCAGTGTGATCCTGGGAGATAAGTGGAAGAAGATGAAGAACGAGGAGAGGAGGATGTACACCATGGAGGCCAAGGCCCTCGCTGAGGAGCAGAAGCGCCTCAACCCTGACTGCTGGAAGCGCAAGAGAACCAACTCGGGCTCACAGCAGAATTAA

Transcript

SKAU_T00024880

TGTTACTGCCATTTTCATTCATTCAGAGGCTTGGTAGCAGGAGGCGTCGTTATTTTCGGGGTGCACGGGAATGGGAATATAGCTTTCTGCAACGTTTTCTGTTAAAATACGTACCACCCGAAATTACAGCTTTTAAGGTAATTTTGTTGAAGCATCGCAGCGTTTATTTTTTAAGGAAATTAGATATTTTGTTCTGATTCCTCCAGAGATTGTCAATAGGAATGAGTATAGAAATTCCCGAAGGACTGACGGAGCTATTGCAAAGCTTTACCGTGGAAGTGTTGAGGAATCAGCCCCGAGATCTGCTGGAGTTTGCCCTGCAGTACTTCACTCAATTGAAGGAAAGTCAGAGCCAAGGGGTCGCTTTTGGCAATGACCAAAATTCGGCTATTAGACCTGGGAAGGCAGTCAACTTTATGGAGGAAGCCATGCAGATCGACTCGGAAAATggggaggatgaagaggaggaggacgaggaattCGTAGctcCAGTGATCAATAGATATGTCAGAAGAGCTTCAGTGTGCGCTGAGGCGTTCAACCCAGATGACGACGAGGAAGACAAGGAGCCCAGGATTACGCATCCTAAAACAGATGAGCAGCGGCAGAGACTGCAGGAGGCATGCAACAACATCCTTCTGTTTAAAAACCTAGACCCGGAGCAGATGTCTCAGGTGCTGGATGCCATGTtcgagaagcttgtggaagccACCGAGCACATCATTGACCAAGATGGCGACGGCGATAACTTCTACGTCATTGAAAGAGGTACTTTTGACATCTTCGTGAAGGTTGACGGCAAGGAACGCACCGTGGGCTCCTACGACGACCGTGGAAGTTTTGGGGAGCTGGCTCTGATGTACAACACTCCAAGGGCAGCCACCATTATTGCTACCTCACCTGGTGCTCTTTGGTGCCTGGACCGACTGACGTTCAGAAGAATCATTGTGAAGAATAAtgccaagaagaagaagatgtaCGAGGCCTTCATAGAGACCCTTCCATTGCTGACATCGCTCGAACTATCTGAGAGAATGAAGGTGGTGGATGTGTTATCCTCAAGAGTTTACAGCGAGGGCGAACAGATCATTGCTCAGGGAGATTTGGCTGATTGTTTCTACATTGTGGAATCTGGAAAAGTTAGAATCACTATGAAGAGGAGCAAATCAAAGAAAGACACGGAGAATGGGGAGGTAGATATTGCCATCTGCACCAGAGGGCAGTATTTTGGAGAACTTGCTCTGGTCACTAACAAGCCCAGGGCTGCTTCAGCGTATGCCGTGGGAGAAGTCAAATGTCTAGTTATGGACGTCCAAGCCTTCGAGAGATTGTTGGGCCCCTGTATGGACATCATGAAGAGAAACATTGAAAACTACGAAGAGCAGCTAGTCGCCCTGTTTGGAATGACATCTCTTGTTAAGtCAGGGGAGCTGACATGGCATAATATGGTGTGGGAAGTGAAGACTGAATTGGTGCCACACAGTACAGAGCAAGGCCAGCAGGTGGAGCTGCAGAGCGTCTCAGGAATGGATGAAGCCTTCGACATGCTCAAGTGCAATGAGGACCTTCCATCCTCCCCAGGATGCCCTACCAGTGAGATACGCATGGAGTATGACGACCTCCCCGAGCTGCAGGAGGTGCAGGAGAGCCGGGCGCTGCCAACGGCGTTCCAGGTGGCGGCAAGAGTGTCCCATCAGGAGCGTCCGCGGGATACCTGGAATCCCGCCCCTGACGGCGGCTCCCCCAACACCAACTGGCTCACAGAGCTAGCCAATATTGCCACGAGCCCACAGAGTCCCCTCTTACAGAGCTCCCCCTGCAACAGGTCCTCCCCTGTCCGCATCTTCGCCACCAGCAACAGTTTACATTCCTATGCTCGCCCACCACTGGCCTCCAGCAGTGCGCCCAGTCCTGCCCGCAGCCATTTGAGAGAGCGCAGACGGGTCAGGGCCAGCAGCGAGTCTGAGTCGGGCGTCTTCTGCACGTCCTCTCTCTCGGACGATGATGACATGGGCTGGTCCCATTCAtggccctccacagcctggcacTGCTTTCTGAAAGGCACACGTATGCGCTTCCACAAGGGGCCCAACGTAGAGTGGCAGGACGTCGAGGACCTGGGCGACTCTGACGACGAGTCTGACGACGAGAGAGAGACACTTTGCCGCTCCCTGAAGAGCTATGGTTCTGAAGGTCTAAAGTTAGTGGCCCATGAGGAGACAGTGTCTTTCGGCCAGTCAGTTCTCaaattgacctttgaccctggttCGCCAGAAGATGGCCTCTTAACAGCAGAATGCAGATTGGATCATCCCTTTTTTGTCAAAAGTAAAGgCTGGGCCTCCTTCTACCCGAGCCTGACCGTGGTCCGGCACGGGATCCCCTGCTACGAGGTTCAGCTGGGAGACGTGTGCCTGCCCCCAGGACACAGAGACGCCATCAACTGTGACGATTCGGTCGTGTTCGACACGTTCAGGAGCTATGACTTCACCCCGCTGGACTCGTCGGCTGTGTACGTTCTGAGCAGCATGGCCCGCCAGCGCCGGGCCTCCCAGTCCAGCGGGGGCGCCGTCAGCCCCGACTGCGAGAAACTGGGCCGGGACCCCGAGCCCCCCGGCCCCTCCCAGTCCCCCCACGGCAAGGCCAACAGGAGCCACAGCTCAGGGACAACCAGCAGTGTCACGCCTACCAAGTGCAAGCGGCCAATGAACGCCTTCATGCTCTTTGCCAAGAAGTACAGGGTGGAGTACACACACATGTACCCTGGGAAGGACAACAGAGCCATCAGTGTGATCCTGGGAGATAAGTGGAAGAAGATGAAGAACGAGGAGAGGAGGATGTACACCATGGAGGCCAAGGCCCTCGCTGAGGAGCAGAAGCGCCTCAACCCTGACTGCTGGAAGCGCAAGAGAACCAACTCGGGCTCACAGCAGAATTAACTCGCAGAACGTGAACTGGAGTCAGGAGTCGGAGAACCGGAGGTGGAATGAGCAGGCCTTCCCGTCTTCTGCCAGATGGATAAGACTTTACTGTGATTACGAATATATTTGCTTTTTTAACTTAATAGAGACATTATACAAAGAAAGAGCAAATGAAAGACaaagtatataaaaaaatgcatataatCTAGTAACTAACAGTGCTTAAGATATTTTCCTATGTTTCTATTGACCGACATGCCTTATTCTTCCAAAGTTAAGAACTGAAGACACGGCTCAGTTGTATTTTTCAGGTAATTTTCATACTCTTGGCTTGAAAGGCGAGATCCTGTGGTGCTACAGTACAGGGCACGAACGAGCTGCAAACAAATCAAgtctatttttaaatgtaaagagaaaaagaagaaaaaggggAATTTGAAATGCTTTATTTCAGCTTGTtcatatgattatgattatttgtATAACTCAATATATATTGCACAGACATGGTAATCCATTTAACTTTGTATTTCCGTAAGGGctttggggggaaggggggtggggtgtatagtgtagtgtaCACCCGCCCGGGACAACGTTCTGTCACACACGGACGGCGCGTTTGACACGGAGAGGTCACATGGTGACATATACCTGGAGTGGAAACACACAAACACGGCACTTCTAGGGCTATGACTACACCCTAAGTGTTTTTGCActttatatacatgtatacatatacatatatatatacatatatatatatatatataaaaatatattattcacgTATATAATCTTGTACAACCAAACCATGTTCACGAGCAGAGAATTTCATTAATTTTTGACACAATTGTGGCCAAACTGTACAGCTCCTGTCTGCTCTCCTGGTCCGCCATTGAATTCTTATAATCTCTGATGTCCATAATGTACAGGTGCTTGGCTCCATCAAACTCTTGCACAGAACTTTCTTGTATGATATtataaatattaaaagtttaaacgtGTAATCTATCCTCTCTGTCTGCTGTGGTCACTGTGTGTTTCTTTtgtggaataaaaataaataaatcatttgatAAAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF02197	RIIa	Regulatory subunit of type II PKA R-subunit	Domain	Interproscan
PF08517	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR003117	Domain	cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain	Interproscan
IPR003652	Domain	Ataxin, AXH domain	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR018488	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR036096	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR039655	Family	HMG box-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15499	HMG BOX-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-