Gene detail

Detailed information of SKAU_T00004600 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00004600	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	CM056376.1	9165717	9173803	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00004600

ATGCTGACCGGAGACGTGAGCACCACTGGGGGAGAGGCCTTCATCGGGGGTCACAGCATACTGCGGGAGCTCTTACGAGTGCAGCAGAGTATCGGGTACTGCCCCCAGTTTGATGCCCTTTTCGAGGACCTCACAGCCAGGGAGCACCTGGAGCTCTATACCCGGCTCAGGGGTATTCCCTGGAAGGACGAGGAACGGgttgTGCAGTGGGCTCTAGAGAAGCTCGAGTTGTCCAAGTATGCGGACAAACCCGCGGGAACCTACAGCGGGGGAAACAAACGCAAGCTTTCCACCGCCATCGCTCTCATTGGATACCCCTCCCTCATCTttttgGATGAGCCCACCACGGGCATGGACCCCAAGGCCCGCCGTTTCCTGTGGAATCTTATCCTCGACATCATCAAGACGGGACGCTCCGTGGTGCTGACGTCACACAGCATGGAGGAGTGTGAAGCCCTCTGTACCAGGCTGGGTATCATGGTGAACGGGAGGTTCAAGTGCTTGGGAAGCATTCAGCACCTGAAGAACAGGTTTGGGGACGGGTACATGATCACGGTGCGCACCAAGGCCAGTGGCAGTGTGAAAGAGGTTGTGAGATTCTTCAACAGGAACTTTCCAGAAGCCATATTGAAGGAGCGGCACCACACTAAGGTACAATACCAGCTCAAGTCCGAGCGCATTTCTCTGGCCCAGGTCTTCAGTAAGATGGAGCAGGTGGTGGAAGTGCTGGGCATCGAAGACTACTCCGTCAGCCAGACCACCCTGGACAATGTGTTTGTGAATTTCGCCAAAAAGCAAAGCGACAACCTGGAGCAGCAAGAGAGTTCTCCCTCTGGTGGCGGCCAGTCGCCACTGCAGCgcatactgagcatgctcagacccCGGCCCGCCAACACTGAGCTGAACGCCCTCGTCAGCGAGGAGCCAGAGGAGCTGGAGAGCGACGATGATGAAGGACTGATCAGTTTTGAGGAGGAAAGGGTGCAGCTGTCTTTTAACACGGACACTCTCTGTTGAGCAACGGACTCCGGCAGgcaaaagagagatggagagagcgtgGCCCACAGCACAGGGACCTGTTTGACTCCTTGAATGAGAGAGGGAAGATTTCAGGTGTGAACCAGAGGACAaacgagggggaaaaaaatattgtttggaGCCAGAAGGGGATTTCCTCAGACTGTGTGCGAAGGAGCGGTGTGCTGTTTCTCTGCGAGACGTCAAAACCCTTTTTTGAGAAGCGGGAGATACTCGCTGGACACACTCGTCAGAACGAGAGATACACTGGAGAGTGGGGGACAGAGGGAGGACAGGCGCCCCAAATTCAGCCCCCATCTCACCCGCCACCCCTCCCATCCGTGCGCATAGCGGGTGAGGTGCACAATGGGAGCTACCCGCAAGAATGCTGACCTTAACGGGATGTTTTGAATCTGTGTTCGACTTTTGAATTTTGTTGTAAGGATGGTATCAGCACAGTTGGAGTATAGCAAGAGGGGTGTGTTAAAAGGGGTTCATTTTAATGGGAAATTctgggtattattattattattattattattatgatgtctTAATGGCCACTGATGTCACAGAATAACATATCATTCTCCTTAAGGTCAGACCACGTTAGGCTCAGCCTGTTAATATCGATGAATGTAAATTAATTTGAAGAACGTTAGTCCCCATTTGCCTGTGTTGCCAGACTCACTCCATATTGAGTTTACtatatttgaaaataattattgCCTTTTAAGCATGCTCTATCTTTGAACTCACTTAGAGAAATGAGTCAAAAACGGTGCAGTGTATCTCTTTTTCTGTGGCGAGAAAAGTGATTTATTCTTTCTAATGAAACATCTTTGGTTGGATGTGTGTGTTTACTTAATAAAATACTGAATGTTAGTGGTAATCTACGTGTGCACCTTCAGAATTGGAAAGTGTAGGCATGCCGGtttgaaattattttattatttctttcatttttttctgtGGGTCCTTGGCCTTTTGTTGTCCTTAACTTGAAAACTGATCTAATTGCAAACAAGAAAACCTTGTTGGCTTGCCAGTGGTAGAATGTAAATGACATGAATATGGGTATTGCAAGAACACAGATTGGTACCCCCTTAAACTTAAGCTCCCCATTAACGGCTTTTGTAGTGCAGTGATTCTCACCTTCCAAACAACAAACAACCAATCCAGGTTCATTTGGCCCAAATCTCATATAAACTTACATTCATCCAGTCAGTCATTTCAGGCAGAATCGATACACTTGGTATGACTGCTTTTTATTTTATCGTTGAATAAATCAAGCTATTCTGCTGCCTTCCTTATTTTCTAGTGCTCTCTTAAATCTGCAGTGATGAAGTTTCTGTTGATGAAATCCCACGTGGATCCAATATATTCATGGTTCCCATCAGATCTTCAGGCCCTGTAGCTGGGGGCTCTTTTTGAAatgataaaacacacacacatattaacaAGGAAAACTGAACAGAAGCGCTCCGCTAAATTGTAGCGCACTTGCGTCCTTGCCAAGGGCCTAGAAATTTGCGCTCAGCCTTTATAAACTTTACAGTTGAGTTGGTGTTTTTATTGCCTTGATATTTCAGAGTGGTGTAGACATTTTATGGATAATTCTCAGAGTTTACACAGGCACTTTTTTTGAGTAATGTGTCCTTTAACACCCCCTCCCTCTACATGAGGTAAAACAAAGTTTACCGAGATACCGTCCATGTTAAGCACTCCTATCCACTCCCCAGTTACAGCACTGTCGttttctgccttttttttttgttatataatAAGGAGTAGTGAAAGACAGCGGCGTTGAATGTGCATTGCGGTTTCCTCAAACGCACACATTGCACAGAAAGGCAGAATGTGTGGAGACGCAATGAAAACCTGAAAAAATTAGCTTCTCTTTTTTTCTAAAAACAAAATCGATGTGTACGACCAAAGGGAAGTTGtgcgcatttaaaaaaaaaaaagaatgacaaAAACTTGAAtgcttgaatgttttttttttaaaaacacttggcAGAAGGTTTGATATACTTTTAAGAAAATTGCCACaatttttgttttcctgtcaaaTTGTCAAATATTTGTGTTGCTGTTGTAAAAAATTTTGAAAAGATAATGGCAGTTTACTTGGACTGAACCCTACCTTAACCATTAAACATTAACCTTTGAACTTTACTCAGTTACTCATGACCGTTATGCTCCGTTTCAATCAGAGCTCTGTGAACCTCTGTGTTACAGTGATTAAAGTCCTGACCCCCTAGGATGGCCTggaatatgcccccccccccccccccccccccccgctctgctGCCCCATCCCCTAAAGGCCTTTACTCTATGGTACTGTGGAGAGCTTCATTCAATAACACGTAATAGAATAACACCGGGTGCTTCTCAGAGTCATTTTAGCTTCAGAAACAGATAGTTGCAGCAAATCATGGAGCAAACCTATGATTAAGAGAGGACCAGACACCAGCAGTTGTACACCGGGTCATGTGAAACCACATGCAGTGATTGATGTCATCCAAAAATCTCTCGCCAATTTAGAGATAAataccgttttttttttccctctggaGCCAAATGCTTTGGAATGTATCCTACATGTGTGtatatgaatataaatatatttatatttatattttatgaatataTGTCTAAGATTTTTTTCTCCTGTAAACTACTGTTCTCACGTAATATTTTGACTTGAAATTTCGGGCTCGTTTCTGATTGGGTCGTTTGTCGTTTCCACACTCTCGTGCTCCAGCTGAAGTGATCTGATATTTTTcaagttaaaacaaaacaaaataaaaaaagatggaTAAATAAAATCAGGTATGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR026082	Family	ABC transporter A	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-